Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1818 ATGTTGGATGCAGAACAATCCTTCTCTGCTAGCATGGAGAGCTCTAGAGAGATGGCTCAGGATTTGGCAGCACCATTGCTAACAAAGAGTGGAGACAAAGATGATGAAGTTGGGGTGGTAACATCATCAGAGAGTACATTTTACCAGGAGCTAAAGAAGGTAAGCTTCATGGCAGCTCCAATGGTGGCTGTGACAGTGTCACAATACCTTCTGCAAGTGGTGTCCCTTATGATGGTGGGACATTTTAGTGAACTTGTCTCCTTCTCTGGGGTTGCCATTGCTATCTCCTTTGCTGAAGTCACCGGATTCAGTGTCCTTTTAGGAATGTCAGGTGCATTGGAAACTTTATGTGGCCAAACTTTTGGTGCAGAAGAGTTTGGAAAGCTGGGAAACTACACGTGCTGTGCAATTTTCACTCTGGTTTTGACCTGTATCCCCATATCTCTCCTGTGGGTATTCACTGATCAAGTACTCATGCTGTTTGGTCAAGACCCTGGAATTTCCCACGCAGCTCGCGAGTACTGTGTCTACCTCATTCCGGGGCTATTTGGCCATGCTGTTCTTCAATCTCTGATCCGCTACTTCCAGACTCAGAGCATGATCATTCCCATGGTTTTTAGCTCAGTTACTGCTCTATGTTTGCATGTTCCAATTTGTTGGTGTCTGGTGTTTAAGTTGGAACTAGGACATGTTGGAGCAGCATTAGCTATTGGAATTTCATATTGGTTGAATGTGGTTTGGCTTGGGGTTTACATGAACTACTCTCCAGCTTGTAAAAAGACCAAGATTGTGTTTTCTTGTAATGCTTTACTAAGCATGCCTGAGTTTCTCCAATATGCTATCCCTTCTGGACTCATGTTTTGTTTTGAGTGGTGGTCCTTTGAGGTGCTTACATTAGTTGCCGGGCTTTTACCTAATCCTCAACTAGAAACCGCAGTTCTTTCAGTCTGCCTTAACACAACCACACTGCACTACTTCGTTACTTATGCTGTTGGAGCTGCTGCAAGCACTCGGGTTTCAAATGAACTAGGAGCAGGGAATCCAAAGACAGCTAAAGGCGCTGTTCGCGTGGTTGTGATTGTTGGGATTGTAGAAGCCATCATTGTCAGCGCATTCTTCATTTGTTTCCGGAATGTATTAGGATATGCTTATAGCAATGACAAGGAAGTGGTGGATTACGTTGCAGACATGGCTCCCCTTCTTTGTGGGTCTGTTATTGGTGATAGTCTAATTGGAGCACTTTCAGGGGTTGCTAGGGGTGGAGGATTTCAGCAAATAGGAGCTTATGCAAACCTGGGAGCATATTATGTTGTGGGAATTCCTATTGGTTTGTTATTGGGTTTTCACCTGCATCTAAATGCCAAGGGGCTCTGGATGGGAACACTATCAGGGTCTGTTTCCCTAGTGATTCTACTTGCTATTGCAACAGCTTTAACAGATTGGCAGAAAGAGGCAGCAAAGGCAAGGGAGAGAATACTTGAGAACTCTATCAAAACTAATGATGCATTAGCATGA 1515 0.4449 MLDAEQSFSASMESSREMAQDLAAPLLTKSGDKDDEVGVVTSSESTFYQELKKVSFMAAPMVAVTVSQYLLQVVSLMMVGHFSELVSFSGVAIAISFAEVTGFSVLLGMSGALETLCGQTFGAEEFGKLGNYTCCAIFTLVLTCIPISLLWVFTDQVLMLFGQDPGISHAAREYCVYLIPGLFGHAVLQSLIRYFQTQSMIIPMVFSSVTALCLHVPICWCLVFKLELGHVGAALAIGISYWLNVVWLGVYMNYSPACKKTKIVFSCNALLSMPEFLQYAIPSGLMFCFEWWSFEVLTLVAGLLPNPQLETAVLSVCLNTTTLHYFVTYAVGAAASTRVSNELGAGNPKTAKGAVRVVVIVGIVEAIIVSAFFICFRNVLGYAYSNDKEVVDYVADMAPLLCGSVIGDSLIGALSGVARGGGFQQIGAYANLGAYYVVGIPIGLLLGFHLHLNAKGLWMGTLSGSVSLVILLAIATALTDWQKEAAKARERILENSIKTNDALA* 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1818 504 PANTHER MULTIDRUG RESISTANCE PROTEIN 43 491 - -
Lja2g1818 504 Pfam MatE 282 443 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g1818 504 Pfam MatE 60 220 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g1818 504 PANTHER PROTEIN DETOXIFICATION 7-RELATED 43 491 - -
Lja2g1818 504 TIGRFAM matE: MATE efflux family protein 60 458 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lja2g1818 504 CDD MATE_eukaryotic 50 487 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1818 Lja-Chr2 18779356 18783379 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1818 2 18779356 18783379 Lja2g2160 2 24398136 24400810 ECH
Lja2g1818 2 18779356 18783379 Lja2g1818 2 18779356 18783379 ECH
Lja2g1818 2 18779356 18783379 Lja1g2514 1 29138466 29142518 PCT