Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1817 ATGGGGCCCACACACGATGACTCTGGCGCCAAGCTCCGCCTAATGTGCAGCTACGGCGGCCACATCCTCCCCCGTCCACGCACCGCCACCCTCTGCTACGTCGGCGGCGACACCCGCATAGTCTCCGTCGACCGCCGCGCCGTGACCACACTCTCCTCGTTAGTCTCCCACCTCTCCTCCGCTCTCTCCCTCGACTTCCCCTTCGCCGTCAAGTACCAGCTCCCTCACCTCGACCTCCGCTCCCTCATCTCCCTCTCCTCCGACAGCGACTTCCGCGCCCTACTCGACCGCCACCACCGCCTCTCCTCCCCGAGAATCAGGCTCTTCCTCTTCCCTCTTATCCGCCACCCCAAGACTGATTCTTGGTTCTTCGATGGTGGTAACTTCTTGCACCCTGAGGTTCACCGCTTTGTCTCCTCTGCTCCGCCGCCTCGTGAAAGCGGTGTGGTTTTGGAGACTAGTTCGTCTTTTGAGTCTTCTTCTTCTTCAGCTTCCTTCACCAGCTTGCCTCCAAGTGATAATTGTGTTTCAAGTATCATGTCCCACCAGCAGAACATATCTCACCAAGACCCTGTGGTTCATATTTCGGAGGCAAGACTCAACGCTGAATCCATTGAAGTTGAAAGCGAAAGTCCTTATATTATTTCTGCTGGGGTCATAGCTAATAACACGAAAATTGGTATAGGGTATTCTGCATTTCCACAGCCTAATCAAGTGGAGAGGTCACATTTGCAGCCTGTGCAAGCTGCTGCACAGGTTTTACCCCTTCACCCGAGTGGCGTGTTGCCAGTACCATCTTATCAGCTCATTTACCAGCAACCACATCCTTTGCAGCATCCAACTTATCATATTAATCAACCAAGCCCTGTCTACCTTGTGCCTGTTGGAAACATGCCTCTCAATGCTTCTAACCAAGTTTCATTGAACCTTAATGCTCCCTCTATGAATTTTCATGTAGATCAAGACTCTGAGGTGGGAGCAAGGTGTCATTTTGCTCATGGTTCTTTTGCCTCCCAGAATTACTTAACAGATAATGCAACCATATCTTTTGTTTATGTACCGTACAATGGAAGTAAGCAGCCAGAAATGGATATTTATCCAATGCATCAGCAATCTCAGACTGTATCTATCACGGAGTTTCCCAAGGATGGAAATGAACTTGATGATGAGCTTGCTCATGATCAGATATATAAATCTCAGCCCCCACCTCCGACAATGCCTTCTAAGCACCAAACCATGATAAAAGCTACAACAAACCTTGTATCAGAGGCTCTTGCTCAATTGCAAGGGGATGACCTCAAGCAGCAGACAGAAACAACATCATGA 1326 0.4985 MGPTHDDSGAKLRLMCSYGGHILPRPRTATLCYVGGDTRIVSVDRRAVTTLSSLVSHLSSALSLDFPFAVKYQLPHLDLRSLISLSSDSDFRALLDRHHRLSSPRIRLFLFPLIRHPKTDSWFFDGGNFLHPEVHRFVSSAPPPRESGVVLETSSSFESSSSSASFTSLPPSDNCVSSIMSHQQNISHQDPVVHISEARLNAESIEVESESPYIISAGVIANNTKIGIGYSAFPQPNQVERSHLQPVQAAAQVLPLHPSGVLPVPSYQLIYQQPHPLQHPTYHINQPSPVYLVPVGNMPLNASNQVSLNLNAPSMNFHVDQDSEVGARCHFAHGSFASQNYLTDNATISFVYVPYNGSKQPEMDIYPMHQQSQTVSITEFPKDGNELDDELAHDQIYKSQPPPPTMPSKHQTMIKATTNLVSEALAQLQGDDLKQQTETTS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1817 441 Pfam PB1 domain 31 112 IPR000270 GO:0005515
Lja2g1817 441 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 7 434 - -
Lja2g1817 441 SUPERFAMILY CAD & PB1 domains 30 112 - -
Lja2g1817 441 SMART PB1_new 26 113 IPR000270 GO:0005515
Lja2g1817 441 PANTHER OS05G0427100 PROTEIN-RELATED 7 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1817 Lja-Chr2 18774108 18776533 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1817 12 112 MAP Kinase Kinase Kinase AT1G04700 42.857 7.30e-17 81.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1817 2 18774108 18776533 Lja2g2136 2 23990849 23993680 ECH
Lja2g1817 2 18774108 18776533 Lja2g1817 2 18774108 18776533 ECH
Lja2g1476 2 14264365 14266947 Lja2g1817 2 18774108 18776533 ECH
Lja5g0313 5 2744985 2747863 Lja2g1817 2 18774108 18776533 ECH