Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1555 ATGGTGAAGATTTGCTGCATTGGTGCTGGATATGTGGGGGGTCCTACAATGGCAGTCATTGCACTGAAATGTCCATCTATAGAAGTTGCTGTTGTTGACATCTCCAAATCCCGCATTGCAGCCTGGAACAGTGACCAGCTTCCTATCTATGAGCCAGGCCTTGATGATGTGGTGAAGCAATGCCGCGGCAAGAACCTCTTCTTCAGCACTGAGGTTGAAAAACATGTCTTCGAGGCTGACATAGTGTTTGTCTCTGTCAACACCCCGACAAAAACTCGCGGTCTTGGAGCCGGCAAAGCAGCGGATTTGACGTATTGGGAGAGCGCAGCTCGCATGATTGCTGATGTTTCCAAGTCAGACAAAATTGTGGTGGAGAAATCCACTGTCCCTGTCAAAACTGCTGAGGCTATAGAGAAAATTCTGACCCACAACAGCAAGGGCATCAAATTCCAGATCCTGTCAAACCCGGAATTCCTGGCTGAGGGAACTGCCATCCAAGATCTTTTCAACCCGGACCGCGTTCTCATCGGAGGCAGGGAGACCCCAGAAGGCCAGAAAGCAATTCAAACATTGAAAAGTGTTTATTCCCAATGGGTTCCTGAGGGGAGAATCCTAACCACAAACCTTTGGTCTGCTGAATTGTCTAAGCTTGCTGCTAATGCCTTCTTGGCACAGAGGATCTCATCTGTCAATGCAATGTCAGCGCTTTGTGAGGCTACCGGGGCAAACGTCAAACAGGTGGCCTATGCTGTCGGTACTGACACAAGAATTGGACCGAAGTTCTTGAATGCCAGTGTTGGATTTGGTGGATCCTGCTTCCAAAAAGATATCTTGAACCTTGTTTACATCTGTGAGTGCAATGGCCTTCCAGAGGTTGCAGAGTACTGGAAACAGGTCATCAAGATCAATGATTATCAGAAGGCTCGATTCGTGAACCGGGTGGTATCGTCCATGTTCAACACAGTGGCAACCAAAAAAATTGCAATTTTGGGATTTGCATTCAAGAAGGACACTGGAGATACAAGAGAAACGCCAGCAATTGATGTGTGCAAGGGGTTACTTGGTGACAAAGCAAGGTTGAGCATCTATGATCCACAGGTAACTGAGGACCAAATTCAAAGGGATTTATGGATGAACAAGTTTGATTGGGACCACCCTATTCACTTGCAGCCAACAAGCCCCACAACTGAGAAGAATGTGAATGTGGTTTGGGATGCTTATGAGGCAACAAAGGATGCAGATGGGGTTTGTGTTCTGACTGAGTGGGATGAGTTCAAGAGCCTTGATTATCAGAGGATATATGATAATATGAGAAAACCAGCATTTTTGTTTGATGGAAGGAATGTTGTGGATGCAGATAAGCTGCGTGAGATTGGATTCATTGTGTACTCAATTGGTAAGCCTCTGGATGCATGGCTCAAAGACATGCCTGCTGTGGCCTAA 1443 0.4657 MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDDVVKQCRGKNLFFSTEVEKHVFEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQTLKSVYSQWVPEGRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVKQVAYAVGTDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKARFVNRVVSSMFNTVATKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARLSIYDPQVTEDQIQRDLWMNKFDWDHPIHLQPTSPTTEKNVNVVWDAYEATKDADGVCVLTEWDEFKSLDYQRIYDNMRKPAFLFDGRNVVDADKLREIGFIVYSIGKPLDAWLKDMPAVA* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1555 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 328 451 IPR014027 GO:0016616|GO:0051287
Lja2g1555 480 PIRSF UDPglc_GDPman_dh 2 467 IPR017476 GO:0016616
Lja2g1555 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 3 186 IPR001732 GO:0016616|GO:0051287
Lja2g1555 480 Gene3D - 1 208 - -
Lja2g1555 480 SMART UDPG_MGDP_dh_C_a_2_a 328 452 IPR014027 GO:0016616|GO:0051287
Lja2g1555 480 TIGRFAM NDP-sugDHase: nucleotide sugar dehydrogenase 3 448 IPR017476 GO:0016616
Lja2g1555 480 SUPERFAMILY 6-phosphogluconate dehydrogenase C-terminal domain-like 210 309 IPR008927 -
Lja2g1555 480 PANTHER UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE 1 480 IPR028356 GO:0003979
Lja2g1555 480 Gene3D - 241 478 - -
Lja2g1555 480 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 3 214 IPR036291 -
Lja2g1555 480 Gene3D - 209 240 - -
Lja2g1555 480 Pfam UDP-glucose/GDP-mannose dehydrogenase family, central domain 210 304 IPR014026 GO:0016616|GO:0051287
Lja2g1555 480 PANTHER UDP-GLUCOSE 6-DEHYDROGENASE 1 480 - -
Lja2g1555 480 PIRSF UDPglc_DH_euk 1 480 IPR028356 GO:0003979
Lja2g1555 480 SUPERFAMILY UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 315 463 IPR036220 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1555 Lja-Chr2 15221385 15224244 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1555 2 15221385 15224244 Lja2g1555 2 15221385 15224244 ECH
Lja1g2796 1 33633146 33636257 Lja2g1555 2 15221385 15224244 ECH
Lja2g1227 2 11619135 11621714 Lja2g1555 2 15221385 15224244 ECH
Lja4g3510 4 66015385 66017411 Lja2g1555 2 15221385 15224244 ECH
Lja2g1555 2 15221385 15224244 Lja1g2796 1 33633146 33636257 PCT