Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1508 ATGGGGAGAGGAAGGGTTCAGTTGAAGCAGATCGAGAACAAAACTAGTCGGCAAGTGACGTTTTCAAAGAGGAGAATGGGGCTGCGAAAGAAAGCCCATGAAATCTCTGTGCTCTGTGATGCTCAAGTAGCATTGCTTGTCTTCAACACCAAAGGAAGACTTTATGAGTTTTCATCTGAATCCAGCATCGAAAACGTGTTGGAACGATATGAGAGACATACCCAAGCAGTGCAACTTGTTGGAGCTGATAAAGAACAACCGAGAAACTGGTCCTTGGAATGCTTCAAGCTCACCGGTAGAGTTGAAGTCTTAGAGAAGAGCATAAGGAACATCGCGGGACATGATCTGGATCCCTTGAACTTGAGAGAGCTTCAGGGTTTGGAGCATCAGCTTGACACAGCTCTAAGGCGCATCCGAACTAGAAAGAACACAGTTGTGAATGAATCCATCTCAGAGCTGCAGAAAAAGTTCATCTCAAGAAAATGGATCCTCTTCAGACTTCAGAGGAATCATCTGCATGCATTCTGCAATCTCTCTCAAGCAAAGGCGTTGCAGGAGCAAAACAATGTGCTAGCAAAGAAGATTAAGGATCAACAGAAGACAATGGCTGAACCTGCACCCTCCTCTACAGAAACACTTGGCCAAAATTCTTCAGGTCTCAACATGGGCACTCCAGAGCAACACTCGACACAAAGACTAGATCCTTCTTTAACACTTGGATTATAA 726 0.4477 MGRGRVQLKQIENKTSRQVTFSKRRMGLRKKAHEISVLCDAQVALLVFNTKGRLYEFSSESSIENVLERYERHTQAVQLVGADKEQPRNWSLECFKLTGRVEVLEKSIRNIAGHDLDPLNLRELQGLEHQLDTALRRIRTRKNTVVNESISELQKKFISRKWILFRLQRNHLHAFCNLSQAKALQEQNNVLAKKIKDQQKTMAEPAPSSTETLGQNSSGLNMGTPEQHSTQRLDPSLTLGL* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1508 241 MobiDBLite consensus disorder prediction 202 241 - -
Lja2g1508 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja2g1508 241 MobiDBLite consensus disorder prediction 196 241 - -
Lja2g1508 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Lja2g1508 241 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Lja2g1508 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja2g1508 241 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lja2g1508 241 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Lja2g1508 241 ProSiteProfiles K-box domain profile. 87 201 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja2g1508 241 PANTHER MADS BOX PROTEIN 1 156 - -
Lja2g1508 241 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 156 - -
Lja2g1508 241 Pfam K-box region 85 161 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja2g1508 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja2g1508 241 Coils Coil 181 201 - -
Lja2g1508 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja2g1508 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja2g1508 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1508 Lja-Chr2 14624737 14643619 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja2g1508 K-box 5.4e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1508 2 14624737 14643619 Lja1g5449 1 92545461 92556064 ECH
Lja2g1508 2 14624737 14643619 Lja4g2064 4 22153053 22168942 ECH
Lja2g1508 2 14624737 14643619 Lja2g1508 2 14624737 14643619 ECH
Lja1g2729 1 32540999 32548040 Lja2g1508 2 14624737 14643619 ECH
Lja2g1279 2 12214763 12219042 Lja2g1508 2 14624737 14643619 ECH
Lja1g2729 1 32540999 32548040 Lja2g1508 2 14624737 14643619 PCT