Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1483 ATGACCCTCTCTTTCAGATTCTTCTCCACTCCAGCAGCCACAGCCCTCAAATCTCGCTTCCTCTTCTCCTTCAGCACATGCTCCTCAACCCACCACGACGCCGTTTCACGCCCTTCCCCCGTTTCCGATCACTTGCGCGCCGCGGTTTCCCAGCCTGAGCTTCTCGTCCGGGTCCTCCACTCGGTCCGAACCCGACCCGGAACTGCTCTCAGATTCTTCCGTTGGGTCGAGAGGCAACCCGGGTTTACTGGGTCTGAATCGGCGTTCGCCGCCATCCTCGATATTCTCGCCAGGAACGGTTGGATGAGGTCTGCGTATTGGGTCATGGAGAAGAATGTGGTTGCTGTGAAAATGGAGGATGCTGTCATGGATGTTTTGGTTAGTGGTTCTTCTTCTTCTTCTTCTTCGGTTAAGCTTCTTGATTTGTTGCTTTTTATTCTGTCGAAAAAATCGATGCTCGAGAAGTGTTTGTTGGTTTTCTACAAGATGATTCATAATGGGTTGTTACCTGGTGTGAGGAATTGCAATAGGGTTCTTAGGATGCTTAGGGATAGGAACATGGTGAATGAAGCTAGTGAGGTTTTTAATGTGATGATTGAGTGTGGGATAAGACCTACCACTGTTACTTATAACACCTTGATGGATTCGTTTTGCAAGGAAGGGGAGGTTCAGCGCGCGGTTGAGCTTCTCACTCGAATGCGGCTAACCAGGTGTGCTCCCGATGATGTGACGTATAATATTTTGGTGAATGGTTGGTCTAACAAAGGGGAGTTGGAGCAGGCGAGGAAACTGATTGAGGAGATGTTGAAATTGGGGCTGAAGGTTTCGGCTTACACGTATAACCCGCTGATTCGCGGGTATCGTGAGAAAGGGCTGCATGAGGAAGCAGCGGATGTATGGGAGATGTTGGATAGAGAAGCTTTGTCTACTGTGGCGACCTACAATACGATTATGTGTGGTCTTTGCAAGTGTGGAAGGGTGAGTGATGCAAGGCCGCTGTTAGATGATATGATGAATAAAAATGTGATGCCGGACTTGGTTTCCTATAATACTCTAATTTATGGTTACAGCAGGTTGGGCAACATGGGGGAGGCTTTTCACTTGTTTGATGAGTTGAGATATAGAAGTCTTGTTCCCACTGTTGTGACCTATAATACGCTTATAGACGGTCTTTGCAGATTGGGGGACATGGATAAAGCCAGGCGGTTAAAAGATGATATGATCAGACACGGACCTCATCCTGATGTATTTACTTTTACAACTCTTGTCAGAGGATTTTGCATCACGGGGAACTTACCAATGGCTAAGGAGCTATTTGAAGAGATGCTTCATAGAGGATTGCAGCCAGATCGTCTTGCATACACAACTCGGATAGTGGGTGAACTGAAACTTGGTGACCCATTTAAGGCTTTTGGTATGCAGGAAGAAATGCTTGCCAACTTTCCTCCTGATTTGATCGTATATAATATCTTCATCGATGGGCTTTATAAATTGGGCAATTTGAAAGAAGCCAATGAACTTGTGCATAAAATGCTCCACGAAGGACTTGTTCCAGATCATGTAACATATACTAGCAACATCCATGCTCACTTGATGGCTGGGCATCTTAGGAAGGCTAGTGCGGTGTTCCGTATGATGTTGGAGAAAGGGATATTACCTTCAGTTGTTACTTATACAGTTTTGATTCATTCATATGCAGTTAGGGGCAGGCTGCAACTTGCTCTTAAGTACTTTTTTGAGATGCAAGAGAAGGGTGTTGATCCAAATGTGATCACCTACAATGCTTTAATCAATGGATTTTGCAAAGTGAGAAAAATGGATCTGGCATACAGTTTTTTTGCGGAAATGCAAGCAAAGGGTATTTATGCAAATAAGTACACCTACACCATTTTAATAAATGAGAACTGCAACTTAGGCCGATGGCAGGAGGCTTTGAGGTTGTATAGGGAAATGCGAGATAGAGAAATTGAACCTGATTCTTGCACACATAGTGCACTATTGTTGAAGCATCTAAACAAAGACTATAAATTCCATGCACTTCAGCATCTTGAGAGTGTAATTGGAGGTGGTGAATAA 2076 0.447 MTLSFRFFSTPAATALKSRFLFSFSTCSSTHHDAVSRPSPVSDHLRAAVSQPELLVRVLHSVRTRPGTALRFFRWVERQPGFTGSESAFAAILDILARNGWMRSAYWVMEKNVVAVKMEDAVMDVLVSGSSSSSSSVKLLDLLLFILSKKSMLEKCLLVFYKMIHNGLLPGVRNCNRVLRMLRDRNMVNEASEVFNVMIECGIRPTTVTYNTLMDSFCKEGEVQRAVELLTRMRLTRCAPDDVTYNILVNGWSNKGELEQARKLIEEMLKLGLKVSAYTYNPLIRGYREKGLHEEAADVWEMLDREALSTVATYNTIMCGLCKCGRVSDARPLLDDMMNKNVMPDLVSYNTLIYGYSRLGNMGEAFHLFDELRYRSLVPTVVTYNTLIDGLCRLGDMDKARRLKDDMIRHGPHPDVFTFTTLVRGFCITGNLPMAKELFEEMLHRGLQPDRLAYTTRIVGELKLGDPFKAFGMQEEMLANFPPDLIVYNIFIDGLYKLGNLKEANELVHKMLHEGLVPDHVTYTSNIHAHLMAGHLRKASAVFRMMLEKGILPSVVTYTVLIHSYAVRGRLQLALKYFFEMQEKGVDPNVITYNALINGFCKVRKMDLAYSFFAEMQAKGIYANKYTYTILINENCNLGRWQEALRLYREMRDREIEPDSCTHSALLLKHLNKDYKFHALQHLESVIGGGE* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1483 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Lja2g1483 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 589 623 IPR002885 -
Lja2g1483 691 Gene3D Tetratricopeptide repeat domain 306 374 IPR011990 GO:0005515
Lja2g1483 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 484 518 IPR002885 -
Lja2g1483 691 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 62 687 - -
Lja2g1483 691 Pfam PPR repeat 556 586 IPR002885 -
Lja2g1483 691 Pfam PPR repeat 278 304 IPR002885 -
Lja2g1483 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 554 588 IPR002885 -
Lja2g1483 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 276 306 IPR002885 -
Lja2g1483 691 PANTHER OS12G0152600 PROTEIN 62 687 - -
Lja2g1483 691 TIGRFAM PPR: pentatricopeptide repeat domain 313 345 IPR002885 -
Lja2g1483 691 TIGRFAM PPR: pentatricopeptide repeat domain 521 554 IPR002885 -
Lja2g1483 691 TIGRFAM PPR: pentatricopeptide repeat domain 278 303 IPR002885 -
Lja2g1483 691 TIGRFAM PPR: pentatricopeptide repeat domain 556 590 IPR002885 -
Lja2g1483 691 TIGRFAM PPR: pentatricopeptide repeat domain 208 241 IPR002885 -
Lja2g1483 691 TIGRFAM PPR: pentatricopeptide repeat domain 486 519 IPR002885 -
Lja2g1483 691 TIGRFAM PPR: pentatricopeptide repeat domain 175 206 IPR002885 -
Lja2g1483 691 TIGRFAM PPR: pentatricopeptide repeat domain 382 416 IPR002885 -
Lja2g1483 691 TIGRFAM PPR: pentatricopeptide repeat domain 591 624 IPR002885 -
Lja2g1483 691 TIGRFAM PPR: pentatricopeptide repeat domain 243 276 IPR002885 -
Lja2g1483 691 TIGRFAM PPR: pentatricopeptide repeat domain 417 450 IPR002885 -
Lja2g1483 691 TIGRFAM PPR: pentatricopeptide repeat domain 626 660 IPR002885 -
Lja2g1483 691 TIGRFAM PPR: pentatricopeptide repeat domain 347 380 IPR002885 -
Lja2g1483 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Lja2g1483 691 Gene3D Tetratricopeptide repeat domain 461 567 IPR011990 GO:0005515
Lja2g1483 691 Gene3D Tetratricopeptide repeat domain 375 460 IPR011990 GO:0005515
Lja2g1483 691 Gene3D Tetratricopeptide repeat domain 568 682 IPR011990 GO:0005515
Lja2g1483 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Lja2g1483 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 206 240 IPR002885 -
Lja2g1483 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Lja2g1483 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Lja2g1483 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Lja2g1483 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 553 IPR002885 -
Lja2g1483 691 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 624 658 IPR002885 -
Lja2g1483 691 Pfam PPR repeat family 588 637 IPR002885 -
Lja2g1483 691 Pfam PPR repeat family 205 251 IPR002885 -
Lja2g1483 691 Pfam PPR repeat family 379 427 IPR002885 -
Lja2g1483 691 Pfam PPR repeat family 483 529 IPR002885 -
Lja2g1483 691 Pfam PPR repeat family 310 349 IPR002885 -
Lja2g1483 691 SUPERFAMILY TPR-like 236 650 IPR011990 GO:0005515
Lja2g1483 691 Gene3D Tetratricopeptide repeat domain 137 305 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1483 325 690 Glycosyltransferase AT1G05670 30.189 2.07e-46 174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1483 2 14363915 14366830 Lja2g1483 2 14363915 14366830 ECH