Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1480 ATGAACAAACGACCTCCGCCACCAGTCTCCGCCGATCTCAGCTCTCGCGAGTTTGAGGTTTCGTCACTCTCGAATCAGAGTGGTTTCCCTAATGATAGCATGGCTGAGTGGAAGCACAAGTTAACAATGCTTTTAAATGACAAGAGTAAGCAAGAGGAGGTCTCGAGGGAGAAAAAGGATAGGCGTGATTTTGAGCAACTAGCCGCTTTGGCCAAGATAATGGGGCTGTATAGCCATAAGTATGGAAAAGTTGTTGTCTTCAGTAAGGTCCCGCTTCCAAACTACAGACGTGATTTGGATGATAAACGCCCGCTGAGAGAGGTGAACCTGCATAGTACTGTGTTAAGGCGAGTTGATGCATATCTTGAAGATTACAAAACCAAAAAGTCCAGAATGAAGAAAAGCTTTTCAGAATTGTTGTCTGCAAGGCCAATCAGTAGCTGTGGTATTGGTACAGATGAAGAGCTCTATGAGCAACCTGAGCTACTAATATCTAGTAAAGCTGTTCTGGAGACAATTCTCTGGCAGAAAAGTTTACAAATGCGTGACGAGCAACAAGCTTGGCAGGAATCACCAGAAGGAAGGAGAATGCTGGAATTTCGTTGCAGTCTCCCTGCTTATAAAGAGAAGGAAGCAATATTATCAGCCATTTCAAGGAATCAGGTACTTGTCATTTCAGGTGAAACAGGTTGTGGGAAGACAACACAACTTCCACAGTTTATTTTAGAATCTGAGATAGGATCAGTTCGTGGGGCTGTTTGTAATATTATATGCACACAACCAAGACGCATTTCAGCAATTTCTGTCTCTGAAAGGGTTGCTTCTGAAAGAGGGGAGAAATTGGGTGAATCTGTTGGCTATAAAGTTAGACTTGAGGGCATGAAAGGGAGAGATACCCATCTTCTCTTTTGCACCACAGGCATCTTACTAAGAAGACTACTAGTTGATAGAAGCTTAAAAGGCGTAACCCATATTATTGTGGATGAAATTCATGAGCGTGGGATTAATGAAGATTTTCTGCTTGTTGTCCTTAAAGATCTCCTAGCTCGCCGACGAGAATTGAAACTGATTTTGATGAGTGCCACCCTTGATGCGGATCTCTTCTCTTCATACTTTAATGGAGCTTCAATCATGAAGATCCCGGGCTTCACCTACCCCGTTAGAACTCATTTTTTGGAGGACATTCTGGAAACGTCGGGGTACAGATTGACCCCGGAGAATCAAATTGATGATTATGGTCAGGAAAGGATTTGGAAAATGAACAAGCAGGCTCCAAGAAAGAGGAAAAGCCAAATTGCTTCTGCTGTAGAGGATGCATTAAGAGATGCTGATTTCAAAGATTATAGTCTGCAAACAAGGGAGTCTTTGTCATGTTGGAATCCTGACTGCATTGGTTTTAACCTAATAGAATACATCTTATGCAATATATGTGAGAATGAAAGGCCAGGTGCTGTTTTGGTTTTTATGACTGGGTGGGATGATATAAGTGCTCTGAAGGAGAAGCTCCTAACACATCCTGTCTTGGGAGATCCAAGCCAAGTCTTGTTGCTTACGTGTCATGGTTCAATGGCCAGTTCGGAGCAGAGGTTAATATTTGAAGAGCCTGAAGATGGAGTACGAAAAATAGTGCTAGCAACAAATATTGCTGAAACTAGTATCACCATAAATGATGTTGTTTTTGTTCTTGACTGTGGAAAGGCAAAAGAATCATCATATGATGCACTTAATAACACACCTTGTTTGCTTCCCACCTGGATCTCCAAAGTTTCTGTTCAACAAAGAAAAGGAAGAGCTGGTCGTGTTCAACCGGGAGAATGTTACCATCTTTATCCTAGATGTGTATATGGTGCTTTTGCAGAATATCAATTGCCAGAAATTTTGAGGACACCTTTGCAATCTCTCTGTCTGCAAATCAAAAGTTTAAAACTAGGAAGTATATCTGAGTTCTTGTCTAGGGCTTTACAGTCTCCTGAGATACTTGCGGTGCAAAATGCAATTGAATATTTAAAAATAATTGGAGCTTTGGATGAGAATGAGAATCTGACTATTCTAGGCCACTATTTGACAAAGTTTCCAATGGAACCAAAACTTGGCAAGATGCTTATATTTGGTGCTATCTTCAATTGCCTGGATCCAATATTAACTATAGCTGCTGGTCTTAGTGTGAGAGATCCTTTTCTAACACCTTTGGATAAAAAGGACCTTGCAGAGGCAGCAAAATCTCAGTTCTGCCATGAATACAGTGACCACCTTACTCTTGTGAGAGCTTATGAGGGCTGGAAGGATGCTGAAATTGACCAAGCAGGGCAAGAATATTGCTGGAAGAATTTTCTTTCAGCACAATCCATGAAAGCTATTGATGGGCTTCGGATAGAATTCTTATCCCTCCTCAAGGATATTGGATTAGTTGATAGCAACACAACCAGCTGCAATTCATGGAGCTATGATATGTATCTCATACGAGCAGCTGTTTGCTATGGGCTATATCCCGGAATTTGCTCTGTTGTGCATAATGAGAAGTCATTTTCTCTGAAAACAATGGAGGATGGCCAAGTTCTCTTACATTCGAATTCAGTTAATGCTCGGGAAACTAAAATTCCATATCCATGGCTAGTTTTTAATGAGAAGATAAAAGTGAACTCAGTATTTCTCCGTGACTCAACAGCTGTGTCTGATTCAGTGGTGCTTCTTTTTGGTGGCAGCATCTCAAAAGGAGATACTGATGGTCACTTAAAAATGTTTGGAGGATATCTGGAGTTTTTCATGAAGGCTGATGTTGCTGACATGTACCTGAGTATAAGGAGAGAACTTGACATCTTCATTCAGAGCAAACTACTATCTCCAATGATGGGTATACACTCATTTCACGAACTCCTGTCTGCTGTACGGTTCCTGATTTCTGACAACAAAGGTGAAGGCAAATTTCTATTCAGTTGCCAGCTACTTGGACCGTCAAAGCCATCTACAGTGTCATTACCGCAGGCATTGGTTTCAAGGACTGAGAGTGGACCTGGCGGTGATAACTCCAAAAGTCAGCTTCAAACATTGCTGACACGTGCCGGATATGATGTTCCCTTATACAAGACCATACAATTGAAGAACAATCAGTTTCAGTCTACAGTTGAGTTTCAAGGAGTGCAGTTAATGGGACAACCTTGTAACAACAAGAAGAATGCAGAAAAAGATGCTGCAGCTGAGGCACTAGAGTGGCTTATGAGTAGAAGTCAGACAGGGAATGAGTACACCAATAACATGACAATGCTAAAAAAAATTAAGAAGGATCATAATTAA 3291 0.4126 MNKRPPPPVSADLSSREFEVSSLSNQSGFPNDSMAEWKHKLTMLLNDKSKQEEVSREKKDRRDFEQLAALAKIMGLYSHKYGKVVVFSKVPLPNYRRDLDDKRPLREVNLHSTVLRRVDAYLEDYKTKKSRMKKSFSELLSARPISSCGIGTDEELYEQPELLISSKAVLETILWQKSLQMRDEQQAWQESPEGRRMLEFRCSLPAYKEKEAILSAISRNQVLVISGETGCGKTTQLPQFILESEIGSVRGAVCNIICTQPRRISAISVSERVASERGEKLGESVGYKVRLEGMKGRDTHLLFCTTGILLRRLLVDRSLKGVTHIIVDEIHERGINEDFLLVVLKDLLARRRELKLILMSATLDADLFSSYFNGASIMKIPGFTYPVRTHFLEDILETSGYRLTPENQIDDYGQERIWKMNKQAPRKRKSQIASAVEDALRDADFKDYSLQTRESLSCWNPDCIGFNLIEYILCNICENERPGAVLVFMTGWDDISALKEKLLTHPVLGDPSQVLLLTCHGSMASSEQRLIFEEPEDGVRKIVLATNIAETSITINDVVFVLDCGKAKESSYDALNNTPCLLPTWISKVSVQQRKGRAGRVQPGECYHLYPRCVYGAFAEYQLPEILRTPLQSLCLQIKSLKLGSISEFLSRALQSPEILAVQNAIEYLKIIGALDENENLTILGHYLTKFPMEPKLGKMLIFGAIFNCLDPILTIAAGLSVRDPFLTPLDKKDLAEAAKSQFCHEYSDHLTLVRAYEGWKDAEIDQAGQEYCWKNFLSAQSMKAIDGLRIEFLSLLKDIGLVDSNTTSCNSWSYDMYLIRAAVCYGLYPGICSVVHNEKSFSLKTMEDGQVLLHSNSVNARETKIPYPWLVFNEKIKVNSVFLRDSTAVSDSVVLLFGGSISKGDTDGHLKMFGGYLEFFMKADVADMYLSIRRELDIFIQSKLLSPMMGIHSFHELLSAVRFLISDNKGEGKFLFSCQLLGPSKPSTVSLPQALVSRTESGPGGDNSKSQLQTLLTRAGYDVPLYKTIQLKNNQFQSTVEFQGVQLMGQPCNNKKNAEKDAAAEALEWLMSRSQTGNEYTNNMTMLKKIKKDHN* 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1480 1096 Gene3D - 993 1077 - -
Lja2g1480 1096 SMART helicmild6 496 602 IPR001650 -
Lja2g1480 1096 SMART ha2_5 664 754 IPR007502 GO:0004386
Lja2g1480 1096 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 214 381 IPR014001 -
Lja2g1480 1096 Pfam DEAD/DEAH box helicase 213 366 IPR011545 GO:0003676|GO:0005524
Lja2g1480 1096 Pfam Helicase conserved C-terminal domain 470 601 IPR001650 -
Lja2g1480 1096 Gene3D - 467 620 IPR027417 -
Lja2g1480 1096 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 468 642 IPR001650 -
Lja2g1480 1096 SMART ultradead3 202 395 IPR014001 -
Lja2g1480 1096 SMART DRBM_3 1009 1072 IPR014720 -
Lja2g1480 1096 MobiDBLite consensus disorder prediction 15 31 - -
Lja2g1480 1096 PANTHER ATP-DEPENDENT RNA HELICASE 8 1023 - -
Lja2g1480 1096 Pfam Double-stranded RNA binding motif 1009 1071 IPR014720 -
Lja2g1480 1096 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1008 1073 IPR014720 -
Lja2g1480 1096 SUPERFAMILY dsRNA-binding domain-like 1004 1083 - -
Lja2g1480 1096 MobiDBLite consensus disorder prediction 1 31 - -
Lja2g1480 1096 Gene3D - 166 382 IPR027417 -
Lja2g1480 1096 Pfam Helicase associated domain (HA2) 665 753 IPR007502 GO:0004386
Lja2g1480 1096 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 820 902 IPR011709 -
Lja2g1480 1096 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 8 1023 - -
Lja2g1480 1096 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 762 IPR027417 -
Lja2g1480 1096 Gene3D - 644 748 - -
Lja2g1480 1096 CDD DEXHc_RHA-like 220 380 - -
Lja2g1480 1096 CDD SF2_C_RHA 385 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1480 Lja-Chr2 14298180 14312580 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1480 2 14298180 14312580 Lja2g1480 2 14298180 14312580 ECH