Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1476 ATGGAGGCGCAACCCACTCCTCCGCCGATCTACCCAGACTCCACAAACTCCTCCCCCCGCTCCCGCAACACCGACTCATGGGACGACCCCTACCCTTCTCCTGCAGCCACCACCACCAAGCTCCGCCTGATGTGCAGCTACGGCGGCCACATCGTCCCCCGCCCTCACGACAAGTCCCTCTGCTACGTCGGCGGCGACACCCGCATCCTCGTGGTGGATCGTACCACCTCCCTCTCTGACCTCTCAGCGCGACTCTCCAAGACGCTCCTCAAGGGTCGACCGTTCGTTCTCAAGTACCAGCTCCCGAACGAGGACCTTGATTCCCTCGTCTCCGTTACCACCGATGAAGACCTCGAGAACATGATCGACGAGTATCTCAACCGGAACCCCTCACGAATTCGCCTCTTTCTGTTCGAGGCTGCGCCGGGAACACCCAAGTCGGAGGAGTGGTTCATGAGCGCGTTGAGCAGAGGTATGCCGGATTCTGCTTCCGTCAATTCCCTCCTCGGGCTGGATGATGACGCTGCTGCTGCGCCGGCGCATGGGAAGAATTCGAAGCAGGAGGTTCAGTCGGTGCCGGATTCTCCTATGCTGGGGACGAATTCGTCTTTTGGCTCTTCTTCTTCGTCGCCGTCGGCGGTGAATTTGCCGCAGATTAAGGTTCGTGTGGAGGAAGGTGGTAGTGGTGGTGGTGGTGGTGTGAATAGGGTGCAGGATCAGAAGGGGGTGGGAATTGAGGAGCAGTTTGCTCAATTGGGTGTTGGTGGGGCGAGGCAGAAGCCAGGTGAGGGGTTTGCTGCGCTCTCTTCGCCACCAGCGGCGGTTGCGGCTGTTGTCTCCGATGAAGAGAGATCGGAGCATGGGGTCCCTGTGGGGCATAGGCAACCACAACAGCAGGTTCAGACTCAAACTACACAGACACAGGTGCAGTCACAATCTCAGGGTCAGGTTCCCCAATTTCAGCAGAATTCAACTGGTTTTGTTGATTTGACTTCCCCTAATTCAGTTGCAAGTGATAATAGTTTTGTAAATGCGATGCCATTTCTGAAACCTGTGATCTATCAAGACCAAGTTCATATTCAATCTGGAACTTCACGGGTTCATACTCCTCCCCCTGTTGATCCCAATTTGTCTGATCGGATCCAGATTCATCAGCAACATGTTCATGACCCCGGATTTGTGTTGCAACAACAGCAGTTTGATCAACAGCGGTTGTTTGATCATCAGCAGCAGCAGGCAAAACAGCAATTTGATCATCAGCAGCAGCAGGCTCAACAGCAGCAACAGCAATTTGATCAACAGCAGCTGTTTGATCATCAGCAGCAGCAGGCTCAACAGCAGCAACAGTTTATGCAGGGATCGCGTGTAATTCAACAGACCCCTGCATACTATCCTGTGTATCAGCAGCAGCAGGTTCATCCCCAGCATCACCATCTGGTTGATCAACAATACCAAGTTTATTATGTGCCTGCGAGACAGGCCCAAGCATATAACTTGCCGGCGCAGCATGCTAATGTTGGTGAATCTGCCACAAATATCTCTCCTAGTGCTGCTCCATCATCTGCTGCTTATAATCCCCTGAGAGATGCTCCCTTGCCTCAGTTTGTTCAGATTCCTACTGGTCAGCATCAGCAGCCGCAACAACAATATGTTGCTTACTCTCAGATTCATCATCCTTCTCAGTTCATGACCCCAAATTCTGCACCACCTTCGAATTATGTTTATGACTTTGCGGATCCTGCTTATGCTCAAATGCTGTATACTCAACCTTTGGCACCCCCATCCCAACACACTAACAGACCATGA 1806 0.5277 MEAQPTPPPIYPDSTNSSPRSRNTDSWDDPYPSPAATTTKLRLMCSYGGHIVPRPHDKSLCYVGGDTRILVVDRTTSLSDLSARLSKTLLKGRPFVLKYQLPNEDLDSLVSVTTDEDLENMIDEYLNRNPSRIRLFLFEAAPGTPKSEEWFMSALSRGMPDSASVNSLLGLDDDAAAAPAHGKNSKQEVQSVPDSPMLGTNSSFGSSSSSPSAVNLPQIKVRVEEGGSGGGGGVNRVQDQKGVGIEEQFAQLGVGGARQKPGEGFAALSSPPAAVAAVVSDEERSEHGVPVGHRQPQQQVQTQTTQTQVQSQSQGQVPQFQQNSTGFVDLTSPNSVASDNSFVNAMPFLKPVIYQDQVHIQSGTSRVHTPPPVDPNLSDRIQIHQQHVHDPGFVLQQQQFDQQRLFDHQQQQAKQQFDHQQQQAQQQQQQFDQQQLFDHQQQQAQQQQQFMQGSRVIQQTPAYYPVYQQQQVHPQHHHLVDQQYQVYYVPARQAQAYNLPAQHANVGESATNISPSAAPSSAAYNPLRDAPLPQFVQIPTGQHQQPQQQYVAYSQIHHPSQFMTPNSAPPSNYVYDFADPAYAQMLYTQPLAPPSQHTNRP* 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1476 601 Pfam PB1 domain 56 139 IPR000270 GO:0005515
Lja2g1476 601 MobiDBLite consensus disorder prediction 281 319 - -
Lja2g1476 601 MobiDBLite consensus disorder prediction 15 33 - -
Lja2g1476 601 PANTHER EXPRESSED PROTEIN 1 596 - -
Lja2g1476 601 SUPERFAMILY CAD & PB1 domains 56 142 - -
Lja2g1476 601 MobiDBLite consensus disorder prediction 406 440 - -
Lja2g1476 601 MobiDBLite consensus disorder prediction 292 319 - -
Lja2g1476 601 ProSiteProfiles PB1 domain profile. 40 140 IPR000270 GO:0005515
Lja2g1476 601 Coils Coil 410 430 - -
Lja2g1476 601 MobiDBLite consensus disorder prediction 1 33 - -
Lja2g1476 601 PANTHER OS05G0427100 PROTEIN-RELATED 1 596 - -
Lja2g1476 601 Gene3D - 60 140 - -
Lja2g1476 601 MobiDBLite consensus disorder prediction 184 213 - -
Lja2g1476 601 MobiDBLite consensus disorder prediction 176 213 - -
Lja2g1476 601 SMART PB1_new 55 140 IPR000270 GO:0005515
Lja2g1476 601 CDD PB1_UP2 44 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1476 Lja-Chr2 14264365 14266947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1476 35 176 MAP Kinase Kinase Kinase AT1G79570 41.401 5.48e-25 108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1476 2 14264365 14266947 Lja2g1476 2 14264365 14266947 ECH
Lja2g1476 2 14264365 14266947 Lja2g2136 2 23990849 23993680 ECH
Lja2g1476 2 14264365 14266947 Lja2g1817 2 18774108 18776533 ECH