LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g1471	ATGCATCCTCCTCTGGTTTTCTTCCTTTTTCTTCTCTGCACTTCTCTTGTTGCACCTGTGAGCTCTATCAACCATGAAGGCTCTGTGCTTTTAACACTGAAGCAGTCCATCATCACAGACCCACAAGGCTCTCTGAGTAACTGGAACTCTTCCGACAACACTCCATGCTCATGGAACGGAATCACATGCATGGATCAAACCGTTGTCGCCATTACCATCCCAAAGAGGAGCCTATATGGTTCTCTCCCCTCTGCTCTAGGATCTCTCTCCCAGCTCCGCCATGTCAACTTGAGGAACAACAAGCTATTCGGAAGCTTGCCTGCTGAACTCTTTGAAGCTCAGGGACTGCAGAGTTTGGTGCTTTATGGGAATTCCTTATCTGGGTCTGTTCCAAATGAGATTGGGAAGCTCAGGTACCTTCAAACTCTTGATTTGTCACAAAATTCCTTTAATGGGTCTTTACCTTCTGCACTAGCTCAATGCAAGAGGCTCAAAACTGTTGGTCTTAGTCATAACAATTTTACTGGTCCTCTGCCTGATGGATTTGGTGGGGGTTTGTCTTTGCTGGAAAAGCTAGACCTTTCTTTCAATCAATTTAGTGGTTCTATTCCTAGTGATATGGGGAAGCTATCAAGCTTGCAAGGGAATGTTGATTTGTCTCATAATCATTTTAGTGGTTTAATCCCAGCTAGCCTTGGTAATCTTCCTGAGAAGGTCTATATTGATCTTTCTTACAACAATTTGAGTGGGCCAATACCCCAAACTGGTGCATTAATGAATAGAGGACCAACAGCTTTTATTGGAAATTCTGGTCTATGTGGCCCCCCTTTGAAGAATTTATGTGCCTTGGATACTCCTGGATCACCTTCCTCTCTTCCTTTTTTACCTGACAGTAACCCACCTCAAGGTAGTAATGACAATGGGAAAAGTGAGAAAAGCAAAGGGCTGAGTAAGGGTGCTGTGGTTGGCATTGTTGTGGGAGATATAATTGGGATTTGCCTTTTAGGTTTGCTTTTCTCTTACTTCTACTCAAGGGTTTGTGGTTTTAATCAGGATCTAGATGAAAATGGTTTTGACAAAGGAGGGAAAGAGAGAAGGGAGTGCTTATGCTTCAGAAAGGATGAATCTGAGTCCCCATCTGATCATGCTGAGCAATATGACCTTGTTCCATTAGATGCTCAAGTAGCCTTTGATTTGGATGAGCTTCTTAAGGCTTCAGCTTTTGTTCTTGGAAAGAGTGGAATAGGGATTGTCTACAAAGTGGTACTTGAAGATGGGCTTACCTTGGCTGTGAGAAGATTGGGAGAGGGAGGTGCTCAAAGGTTTAAAGAGTTCCAAACAGAAGTTGAAGCAATAGGGAAGTTAAGGCATCCAAATGTTGTTACTCTGAGGGCCTATTACTGGTCAGTTGATGAGAAGCTTCTCATCTATGATTATATCTCCAATGGAAGCCTTGCTACAGCAATTCATGGGAAGGCTGGACTTGTCGCATTTACACCACTATCTTGGTCCGATCGAATGAAAATCATAAAAGGAATCGCGAAAGGATTGGTCTACCTGCATGAGTTTAGTCCCAAAAAGTATGTTCATGGAGACCTGAAACCAAGTAACATACTACTAGGCCATAGCATGGAACCCCACATTTCTGATTTTGGTCTTGGACGCCTTGCGAATATTGCTGGAGGGACTCCAACCTTGCAATCCAGCCGAGTTGCTGCGGAGAAACCCCGAGAAAGACAAAAGAGCTTATCCACAGAAGTAGCAGCTAACATTTTGGGGAACGGTTATCAGGCTCCAGAAGCACTGAAAATGGTGAAGCCATCACAGAAGTGGGATGTTTATTCTTATGGTGTAATTTTGCTTGAAATGATCACAGGAAGATTGCCAATTGTCCAAGTGGGAAACTCAGAAATGGACCTTGTTCAGTGGATTCAGTTCTGCATTGATGAGAAGGAGCCACTCTCAGATGTCCTAGATCCCTTTTTAGCTGAAGATGCAGAAAAGGAAGAGGAGATTATTGCAGTTTTGAAGATTGCACTTGCTTGTGTCCATAGCAGCCCTGAAAAGAGACCCATGATGAGGCATGTCCTTGATGCTTTAGATAGATTGTCCATATCCTCTGATTGA	2127	0.4344	MHPPLVFFLFLLCTSLVAPVSSINHEGSVLLTLKQSIITDPQGSLSNWNSSDNTPCSWNGITCMDQTVVAITIPKRSLYGSLPSALGSLSQLRHVNLRNNKLFGSLPAELFEAQGLQSLVLYGNSLSGSVPNEIGKLRYLQTLDLSQNSFNGSLPSALAQCKRLKTVGLSHNNFTGPLPDGFGGGLSLLEKLDLSFNQFSGSIPSDMGKLSSLQGNVDLSHNHFSGLIPASLGNLPEKVYIDLSYNNLSGPIPQTGALMNRGPTAFIGNSGLCGPPLKNLCALDTPGSPSSLPFLPDSNPPQGSNDNGKSEKSKGLSKGAVVGIVVGDIIGICLLGLLFSYFYSRVCGFNQDLDENGFDKGGKERRECLCFRKDESESPSDHAEQYDLVPLDAQVAFDLDELLKASAFVLGKSGIGIVYKVVLEDGLTLAVRRLGEGGAQRFKEFQTEVEAIGKLRHPNVVTLRAYYWSVDEKLLIYDYISNGSLATAIHGKAGLVAFTPLSWSDRMKIIKGIAKGLVYLHEFSPKKYVHGDLKPSNILLGHSMEPHISDFGLGRLANIAGGTPTLQSSRVAAEKPRERQKSLSTEVAANILGNGYQAPEALKMVKPSQKWDVYSYGVILLEMITGRLPIVQVGNSEMDLVQWIQFCIDEKEPLSDVLDPFLAEDAEKEEEIIAVLKIALACVHSSPEKRPMMRHVLDALDRLSISSD*	709

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g1471	708	Gene3D	Phosphorylase Kinase; domain 1	374	479	-	-
	Lja2g1471	708	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	528	540	IPR008271	GO:0004672\|GO:0006468
	Lja2g1471	708	SMART	LRR_typ_2	137	161	IPR003591	-
	Lja2g1471	708	SMART	LRR_typ_2	186	210	IPR003591	-
	Lja2g1471	708	SMART	LRR_typ_2	89	113	IPR003591	-
	Lja2g1471	708	Gene3D	Ribonuclease Inhibitor	22	182	IPR032675	-
	Lja2g1471	708	Gene3D	Ribonuclease Inhibitor	183	283	IPR032675	-
	Lja2g1471	708	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	4	707	-	-
	Lja2g1471	708	CDD	STKc_IRAK	410	703	-	-
	Lja2g1471	708	SMART	serkin_6	409	704	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja2g1471	708	Gene3D	Transferase(Phosphotransferase) domain 1	480	707	-	-
	Lja2g1471	708	Pfam	Protein kinase domain	410	697	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja2g1471	708	SUPERFAMILY	L domain-like	25	278	-	-
	Lja2g1471	708	PANTHER	RECEPTOR PROTEIN KINASE-LIKE PROTEIN ZAR1	4	707	-	-
	Lja2g1471	708	SUPERFAMILY	Protein kinase-like (PK-like)	409	700	IPR011009	-
	Lja2g1471	708	Pfam	Leucine rich repeat	91	149	IPR001611	GO:0005515
	Lja2g1471	708	MobiDBLite	consensus disorder prediction	291	314	-	-
	Lja2g1471	708	Pfam	Leucine rich repeat N-terminal domain	24	63	IPR013210	-
	Lja2g1471	708	ProSiteProfiles	Protein kinase domain profile.	404	703	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g1471	Lja-Chr2	14244776	14247755	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g1471	1	708	Receptor kinase-like Gene Family	AT2G01210	67.594	0.0	997

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-III	Lja2g1471		Pkinase	3.1e-33	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja2g1471	2	14244776	14247755	Lja2g1471	2	14244776	14247755	ECH