Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1465 ATGAAACCAAAAACTCTCTTCTCCACGCTCCTCAACCCACCCTGTTCTTACCCTTTTTATTCATACATAATTTGCTTCTCTATCCTGTCCCCAACCACTTTCTCTTATGTGGATCCGAAGTTCCAAGCTTGTGAACCAAAGTCCTGTGGTAATGGCCAAAACATAAGCTACCCCTTCTACATCACAGAGAAGCAACAACCCTTTTGTGGGAATCCAGGTTTTGAGCTCACTTGTGGCAAGAATGGTTTCCCAAATTTCAACCTTATCAACATCCAATATACCGTCCAAGAAATCTTCTACAACAACCAAACACTCCGACTGTCCAACCCTGCATTTTCAGAGTCAAACGCCTCAGCATGTGTTGCTCCAACCCAGAACCTCACAGTTGGGAAATACAGGTTTCAAATTGTTCCCAACCAAAGGGATATGTTGTTGTTCTACGGCTGCAACTCAACATCGCTACCTGATTGGCTGAAAAAACAAGAGATAGGGTGTTCTGCAGAAAACAGAACAAGTTCAGTGGTGGGTTTATATAATAGGGAGGATCAGAATTTGAGGTTACTGAGGGAGAAGTGCAAGGGTGGAGTGGTGAATGCAATAGTGGAAGATGAGAAAGTAGGGGTAAAAGAGGCACTGAGAAAAGGGTTTGTGTTGAAATGGAATGCATCTAACTGCAGCGAGTGCAAGAACAGTGGAGGAAGGTGCGGGTTCGATTTGGATCCTCAAACATACGCTTTCAGGTGCTACTGTCCTGATAGAGTTCACGCTGTAAAATGTGGGGCAAACAGGTTGAACAAGACAGAGAAGCTAGGCATAGGTTTAGGCGTTGGACTCATATGCATCTTGATAATTGGCTTGCTCCTTCTATTTTACAAGCGAAAACATGGTTCCTCAGGAGGTCAATTTCAAAGACAAAATACTTCCTCTAACTCCCCCAATCCGGAGGCAGAAAATGTCATGGTCTACTTTGGAGTTCCCGTCTTCTCCTACAAGGAGCTTGAAGAAGCAACAAAGCATTTCGATCCTTATAGTCAAGTTGGAGATGGAGGCTTCGGGACTGTCTACTATGGGAAACTTCAAGATGGACGGGATGTTGCTGTCAAGCGTTTGTACGAGCATAACTACAGACGAGAAGAACAGTTCTTGAATGAAGTTAAGATCCTCACCCGTTTGCGCCATAAAAATCTCGTGTCACTCTATGGCTGCACTTCACGCCAGAGCCGTGAACTGTTGCTTGTGTATGAATATATTCCAAATGGCACTATTGCTTGTCACCTCCATGGTGAATTGGCAAAGCCTGGCTCACTACCATGGCCCATACGACTTAAAATTGCCATTGAGACTGCTAGTGCACTGGCGTATCTTCATTCTTCTGACATTATTCACCGTGATGTGAAAACTAACAACATCCTCCTTGACAACAATTTTTGTGTTAAAGTTGGAGACTTTGGCCTTTCAAGACTATTCCCCACTGATGTAACCCATGTCTCCACAGCTCCACAAGGGACCCCGGGTTATGTTGACCCGGAGTATTACCAGTGCTACCAGCTTACTAGTAAGAGTGATGTATTTAGTTTTGGAGTTGTACTCATTGAGCTAATATCATCTAAGCCAGCAGTTGATATGAACAGGGATAAGGATGAAATCAACCTGTCAAGTCTAGCCATAAAGAAGATTCAAGAAAATGCACTGAGTGAGCTGGTTGATCCTTCTCTTGGCTTTGGTTCAGACAATGAGGTTACTAGGATGATAGTTTCGGTGGCAGAATTGGCTTTTCAATGTTTGCAGAAGGACAAGGAATTGAGACCTTCAATGGAGGAAGCCTTTGAGGTGCTGAGGACAATTGAAAGTGGGAAGGATAAGCCAGAACCAGAGCATCTAGAAGAAGATGTTCATAGTTCTGGGGCTTCATGCAGTAATGTACATCCACCATCGCCAACCTTGCCCGAATGTGATGAAGTTGGATTAGTGAAGAACATGAAGCCACCTTATTCACCAATATCAGTTACTGATAGCTGGGACAGTAAATCTACTACACCTAATGTCAGTAGTTAA 2055 0.4375 MKPKTLFSTLLNPPCSYPFYSYIICFSILSPTTFSYVDPKFQACEPKSCGNGQNISYPFYITEKQQPFCGNPGFELTCGKNGFPNFNLINIQYTVQEIFYNNQTLRLSNPAFSESNASACVAPTQNLTVGKYRFQIVPNQRDMLLFYGCNSTSLPDWLKKQEIGCSAENRTSSVVGLYNREDQNLRLLREKCKGGVVNAIVEDEKVGVKEALRKGFVLKWNASNCSECKNSGGRCGFDLDPQTYAFRCYCPDRVHAVKCGANRLNKTEKLGIGLGVGLICILIIGLLLLFYKRKHGSSGGQFQRQNTSSNSPNPEAENVMVYFGVPVFSYKELEEATKHFDPYSQVGDGGFGTVYYGKLQDGRDVAVKRLYEHNYRREEQFLNEVKILTRLRHKNLVSLYGCTSRQSRELLLVYEYIPNGTIACHLHGELAKPGSLPWPIRLKIAIETASALAYLHSSDIIHRDVKTNNILLDNNFCVKVGDFGLSRLFPTDVTHVSTAPQGTPGYVDPEYYQCYQLTSKSDVFSFGVVLIELISSKPAVDMNRDKDEINLSSLAIKKIQENALSELVDPSLGFGSDNEVTRMIVSVAELAFQCLQKDKELRPSMEEAFEVLRTIESGKDKPEPEHLEEDVHSSGASCSNVHPPSPTLPECDEVGLVKNMKPPYSPISVTDSWDSKSTTPNVSS* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1465 684 Pfam Wall-associated receptor kinase C-terminal 176 252 IPR032872 -
Lja2g1465 684 Pfam Protein kinase domain 343 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1465 684 Pfam Wall-associated receptor kinase galacturonan-binding 44 108 IPR025287 GO:0030247
Lja2g1465 684 MobiDBLite consensus disorder prediction 615 632 - -
Lja2g1465 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Lja2g1465 684 Gene3D Transferase(Phosphotransferase) domain 1 417 624 - -
Lja2g1465 684 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 40 683 IPR044652 -
Lja2g1465 684 SUPERFAMILY Protein kinase-like (PK-like) 324 617 IPR011009 -
Lja2g1465 684 MobiDBLite consensus disorder prediction 615 684 - -
Lja2g1465 684 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 40 683 - -
Lja2g1465 684 Gene3D Phosphorylase Kinase; domain 1 312 416 - -
Lja2g1465 684 CDD STKc_IRAK 346 612 - -
Lja2g1465 684 MobiDBLite consensus disorder prediction 665 684 - -
Lja2g1465 684 ProSitePatterns Protein kinases ATP-binding region signature. 346 368 IPR017441 GO:0005524
Lja2g1465 684 SMART serkin_6 340 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1465 684 ProSiteProfiles Protein kinase domain profile. 340 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1465 Lja-Chr2 14157536 14162557 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1465 224 684 Receptor kinase-like Gene Family AT1G25390 57.962 7.65e-175 511
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Lja2g1465 Pkinase 3.8e-49 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1465 2 14157536 14162557 Lja2g1465 2 14157536 14162557 ECH