Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1460 ATGTACTTCCCATTCACCAACACAACAAATCCAGAATGTGGTTTGTACTTGAGTCAGTTGAGTGGCTGTGATGACCCTGCAGGTTCAGCCGTAGAACTTCGTTTGGAAAATGAACACAAGACAAAAACAACATGGCTTCAAGTTGACAGCATAGTCACCTTCTTTCCAACTTCAACGATGCTTGTCCACGACACTAGCCTTGAAAAGTTCCTCTACCAGGAAGGCACCAGTGAAGATTTCCGCAAATACTTGCACAACGTTACCCTTCCCCCGCCGTCTCCTCTCATGTCTTTTGAGAAGGAATTTAATCAAACAAAGACTCTGCACGCATGTGATGGGGCTGTTGATGCAAGTTTTAACCACTCATATTGCAATGATTTGATTCTATACGATGGTTTCCACACACCTTCCAATCAATGCACAACTTTCCAGATTCCATTTATACAATCAGATTCTATTAATTATTCTGTTACCACTGAATTTACCATCAAAGTAACATTATCTGAGGACTGTCGAAATTGCATGTATCGAAGTGGAGGACGATGTGGACTTGATCACAGTGGAATGTTTCATTGTATCTTTCAAGGTTCGTGTAGTAATAACCCATCGTTTGAGTTGACTTCTTCAGCTGCTCTCGTTGCAATGCTTATGATCTTGAGATGCTGTTTGGCAAGACCCCCTGCATGTATTTTCTTTTGGAAAGGTGAAAATCTTACAGAAAAGAAAATTGAGATGTTTTTGAAGAGGCATGAACTCCAGATAAACAAAAGATACACTTATTCTGAGATAAGAGAAATGACCAACTGCTTCAAGGACAAATTAGGCAAAGGGGGTTTTGGAAGTGTGTACAAAGGGAAGTTGCCTGATGGACGACTTCTTGCGGTCAAGGTTTTAAACAAGTTGAAAGGAAATGGTGAAGAATTCATCAATGAAGTTGCCAGTATCAGCCAAACTTCGCATGTTAACGTAGTCAGTCTCTATGGATTTTGTTTTCAAGGTTCAAAACGAGCTCTGGTTTATGAATTTATGCCTAATGGATCTCTTGAGAAGTTCATATATGAAGATAATGCTGCAAAGGTTGATCGTCAATTGGATTGCAAAACTTTACATGATATTGCCATTGGTACTGCTCGAGGTTTAGAGTACTTGCATAGAGGTTGCAACACCAGAATCTTACATTTTGACATCAAACCTCACAATATATTGCTTGATGTGGACTTCTGTCCAAAGATTTCAGATTTTGGACTTGCAAAAATATGCCCAAGAAAGGAGAGTATTGTGTCCATGTTAGTTGCAAGAGGAACTGCAGGATATATTGCTCCTGAGGTGTTTTCAAGAAATTTTGATGGTGTGTCTCATAAATCAGATGTCTATAGTTTTGGAATGATGGTTCTAGAAATGGTTGGAGGAAGAAAGAATATTAATGTGGAAGTTGAGTGTTCCAGTGAAATATATTTTCCACATTGGATTTATAAGTCTCTAGAAAAAAATCAAGAACTTGCACTGAGGTGTATCAAAAATGAAAATGATAATGAGATGGTAAGGAAGATGATTCTGGTAAGCTTATGGTGCATACAAACAGACCCTTCTGCTCGTCCAACAATGAGTCAAGTGGTAGATATGTTGGAAGGAAGCGTTGAATCGCTGCAAATACCACCAAAACCTTTCTTATCTTCGCCAAGAGCATCACCGACCCATTACTCAACTTCAACCTTAAGTCAGCCAGTATCACTGTAA 1737 0.3921 MYFPFTNTTNPECGLYLSQLSGCDDPAGSAVELRLENEHKTKTTWLQVDSIVTFFPTSTMLVHDTSLEKFLYQEGTSEDFRKYLHNVTLPPPSPLMSFEKEFNQTKTLHACDGAVDASFNHSYCNDLILYDGFHTPSNQCTTFQIPFIQSDSINYSVTTEFTIKVTLSEDCRNCMYRSGGRCGLDHSGMFHCIFQGSCSNNPSFELTSSAALVAMLMILRCCLARPPACIFFWKGENLTEKKIEMFLKRHELQINKRYTYSEIREMTNCFKDKLGKGGFGSVYKGKLPDGRLLAVKVLNKLKGNGEEFINEVASISQTSHVNVVSLYGFCFQGSKRALVYEFMPNGSLEKFIYEDNAAKVDRQLDCKTLHDIAIGTARGLEYLHRGCNTRILHFDIKPHNILLDVDFCPKISDFGLAKICPRKESIVSMLVARGTAGYIAPEVFSRNFDGVSHKSDVYSFGMMVLEMVGGRKNINVEVECSSEIYFPHWIYKSLEKNQELALRCIKNENDNEMVRKMILVSLWCIQTDPSARPTMSQVVDMLEGSVESLQIPPKPFLSSPRASPTHYSTSTLSQPVSL* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1460 578 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 570 IPR045874 GO:0004672
Lja2g1460 578 SMART serkin_6 268 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1460 578 ProSitePatterns Protein kinases ATP-binding region signature. 274 296 IPR017441 GO:0005524
Lja2g1460 578 SUPERFAMILY Protein kinase-like (PK-like) 250 543 IPR011009 -
Lja2g1460 578 ProSiteProfiles Protein kinase domain profile. 268 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1460 578 Pfam Protein kinase domain 271 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1460 578 CDD STKc_IRAK 274 544 - -
Lja2g1460 578 ProSitePatterns Serine/Threonine protein kinases active-site signature. 391 403 IPR008271 GO:0004672|GO:0006468
Lja2g1460 578 MobiDBLite consensus disorder prediction 553 578 - -
Lja2g1460 578 Gene3D Phosphorylase Kinase; domain 1 241 342 - -
Lja2g1460 578 MobiDBLite consensus disorder prediction 561 578 - -
Lja2g1460 578 Gene3D Transferase(Phosphotransferase) domain 1 343 551 - -
Lja2g1460 578 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 2 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1460 Lja-Chr2 14119202 14121225 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1460 206 577 Receptor kinase-like Gene Family AT4G18250 53.264 1.10e-130 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja2g1460 Pkinase 5e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1460 2 14119202 14121225 Lja2g1460 2 14119202 14121225 ECH