Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1459 ATGATATTGAGATGCTGTTTTACAAGACCCCCTGCATCCATTTTCTTTTGGAAAGCTGAAAATCTTACAGAAAAGAAAATTAAAATATTTTTGAAGAGGCATGAACTCCATCTAACCAAATGGTACACTTATTCTGAGATAAGAGAAATGACCAGCTCCTTCAAAAGCAAACTAGGCCAAGGAGGTTATGGAAGTGTATACAAAGGAAAATTGCCTGATGGACGACTTGTTGCAGTGAAGATTTTAAACAAGTTGAAAAGAAATGGTGAAGAATTCATCAATGAAGTTGCCAGTATCAGCCAAACTTCGCATGTTAATGTGGGTGGTCTCTTTGGATTTTGTTTTCAAGGTTCAAAAAGAGCTCTAGTTTATGAATTTATGCCTAATGGATCTCTTGAGAAGTTTACATATGAAGATAATGCTGCAATTGTTGATCGTCAATTGGATTGCAAAACTTTGCATCAAATTTCCATTGGTACTGCTCGAGGTTTAGAGTACTTGCATAGAGGTTGCAACACTCAAATCTTACATTTTGACATCAAACCTCACAATATATTGCTTGATGTAGACTTCTGTCCGAAGATTTCAGATTTTGGACTTGCAAAAATATGCCCAAGAAAGGAGAGTATTGTGTCCATGTTAGTTGCAAGAGGAACTGCAGGATATATTGCTCCTGAAGTGTTTTCAAGAAATTTTGGTGGTGTGTCTCATAAATCAGATGTCTATAGTTTTGGAATTATGGTTCTAGAAATGGTTGGAGGAAGAAAGAATATTAATGTGGAAGTTGAGTGTTCTAGTGAAATATATTTTCCATATTGGATTTATAAGTCTCTAGAAAAAAATCAAGAACTTGCACTGAGGTGTATCAAAAATGAAAATGATAATGAGATGGTAAGGAAGATGATTCTGGTAAGCTTATGGTGCATACAAACAGACCCTTCTGCTCGTCCAGCAATGAGTCAAGTGGTAGATATGTTGGAAGAAAGCGTTGAATCGCTGCAAATACCACCCAAACCTTTCTTATCTTCACCAAGATCAACACCAGCCCATTACTCAATTATGTACAAAATGAAAGGATTTATTCAAGATACTACAATTTTTCCGACGCACCACCGCCACCGGCCACCAGCCCACCACAATCCTTCTCTGCTCAGTGCTCACTATCTTCTCTCTCTCTCACGAGTCACGACTCTGGTTCTTCCTCACTTCTACTTCTCAACTCTCAAGCACAACACACACCAGTGA 1245 0.3791 MILRCCFTRPPASIFFWKAENLTEKKIKIFLKRHELHLTKWYTYSEIREMTSSFKSKLGQGGYGSVYKGKLPDGRLVAVKILNKLKRNGEEFINEVASISQTSHVNVGGLFGFCFQGSKRALVYEFMPNGSLEKFTYEDNAAIVDRQLDCKTLHQISIGTARGLEYLHRGCNTQILHFDIKPHNILLDVDFCPKISDFGLAKICPRKESIVSMLVARGTAGYIAPEVFSRNFGGVSHKSDVYSFGIMVLEMVGGRKNINVEVECSSEIYFPYWIYKSLEKNQELALRCIKNENDNEMVRKMILVSLWCIQTDPSARPAMSQVVDMLEESVESLQIPPKPFLSSPRSTPAHYSIMYKMKGFIQDTTIFPTHHRHRPPAHHNPSLLSAHYLLSLSRVTTLVLPHFYFSTLKHNTHQ* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1459 414 ProSitePatterns Protein kinases ATP-binding region signature. 58 80 IPR017441 GO:0005524
Lja2g1459 414 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 15 356 - -
Lja2g1459 414 SMART serkin_6 52 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1459 414 Gene3D Phosphorylase Kinase; domain 1 15 126 - -
Lja2g1459 414 Gene3D Transferase(Phosphotransferase) domain 1 127 335 - -
Lja2g1459 414 PANTHER RUST RESISTANCE KINASE LR10-RELATED 15 356 IPR045874 GO:0004672
Lja2g1459 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Lja2g1459 414 Pfam Protein kinase domain 55 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1459 414 SUPERFAMILY Protein kinase-like (PK-like) 35 327 IPR011009 -
Lja2g1459 414 ProSiteProfiles Protein kinase domain profile. 52 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1459 Lja-Chr2 14097077 14099946 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1459 38 342 Receptor kinase-like Gene Family AT4G18250 56.869 2.43e-124 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Lja2g1459 Pkinase 7.3e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1459 2 14097077 14099946 Lja2g1459 2 14097077 14099946 ECH