Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1453 ATGGCCACCACGCATTCGCAAGCTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCTGTGGCCACTATGCCTGTAGCAGCCACTCCGACTTCAACCGCCGCTACCGGTTGCTCCTCCCTCCTCCTCCAATCGCCGATTCTGATATTCTCTCTGTTCCACAAGGCCATTAGCTCTGAACTCCGCTCACTCCACCGAGCTTCCCTCGACTTCGTTTCCGACCCTTCTCACCTCATTTCCTTCTCACGCCGCTGCCACTTTCTTCGCACCATCTACAAGCACCACTGCAATGCCGAGGACCAGGTCATATTTCCTGCCTTAGATAAACGTGTGAAGAATGTGGCGCGCACCTATTTTTTGGAACACGAGGGGGAGGGTCTACTTTTTGATCAGTTGTTCAAGCTGCTAAATTCTAACTTGCTAGATGAAGAGAGCTATCGAAGAGAATTAGCATCATGTACTGGAGCACTTAGAACATCAATTAGCCAGCACTTGTTTAAGGAAGCAGAACAGGTCTTCCCTTTGGTCATTGAAAATTTTTCATCTGAAGAGCAGGCATCATTGATATGGCAATTCCTTTGCAGCATACCAGTTAAAATGATGGCAGAATTTCTTCCCTGGCTTGCTTCATACATATCATCTGATGAGCATCAGGATCTGCTTAGGTGCTTGGGCACAGTTATTCCCAAAGAGAAGCTTCTTCATCAGGTTGTCTTTGGATGGATGAAAGGACAAAATATCAAATGTAGAAGTTGTACACATAATACCGAGGTTCAGTGGCAGGAGGCCGGAACAAGCAAATTACCCAGTTATAATGATGAAAAGGCGTATGGTAATTGTGGACCTTCTAAAACTGTTAAAAGGAAATGGGTGGAGCTAAGTGAAGATCCAACAAATTACACTATAGCATGCCCCTTAGATGAATTATTACTTTGGCATAAGGCTATAAAGCATGAGTTGAATGATTTAGCTGAGACAGCTAGGAAAATACGACTATCTGAAGAATGTTCTGGTTTGTCTTCTTTTAATGGGAGGCTGCAATTTATATCTGAAGTCTGCATCTTTCACAGCATTGCTGAGGACAAAGTTATATTCCCCGCTGTAAATGCAGAGATATATTTGCTCCAAGACCACGCAAACGAGGAACTCCAATTTGACAATCTTAGGTGCCTGATAGAAACTATCCGAAGTGCTGGAGCCAACCCATCTCCTGAATTCTTTATTAGGCTGAGCTCCCATGCTGAAGAAATAATGAATACTATACTGAAGCACTTTGAAAATGAGGAAACTCAGGTTCTTCCACTTGCACGAAAGCTACTTAGCCATCAAAGGCAACGAGAATTACTTTATGAAGGCTTGTGCATGATGCCCTTGAAGTTGATCGAATGTGTATTACCATGGCTAGTAGGATCACTGAATGAAACAGAAGTTAGGTCATTTCTTCAGAATATGCATATGGCAGCTCCAGCTTCTGATCATGCGCTGGTTACCCTTTTTTCTGGTTGGGCATGCAACAGACATTCCATGAGCAGTTGCTTCTCTTCAAGCGTGACAGGTTTATGTCCTGCCAGGAGATTGATGGAGATGGAAATAACTAGCTTATCATTTTGCTTGTGTGAGCATACATTCAGTCATTGTAAAAAGTCTCCATACGTTCAACAAGATAGTACAAATGGTCATGTTGGACCTGTCAAGCATGGAAATCCCGAAACAAGACAAGACAATGACGTTTCTAACCTGATAATAACTAGTGAAACTCTTAACTTGCCTTATAATCAGTCCTGCTGTGTCCCAGGATTAGGGTTGAATCCAAGTCACCGAGGAAATGGTTTGTTGGCCCAAACAAAGTCTCTGCGAGCTTTATCAGATTGTCCATCTGCGCCTTTCCTCAATTCCAGTCTTTTTATGTGGGGAACCGATATAGTCTCTGCCGATAATCAATTTACAACACGGCCTATTGATAACATATTTAAATTTCACAAGGCCATCTGTATAGACTTGGAGTATTTAGATCTTGAATCCGGAAAACTTAATGATTGTGATGAAATTTTCATTCAGCAATTCACAGGTAGATTTTTCTTGTTGTGGGGTTTGTATAGAGCTCATAGTAATGCAGAAGATGATATAGTATTTCCAGCATTAGAATCAAAAGAGAATCTTCACAATGTGAGCCATTCTTACACTTTGGACCACCAGCAGGAAGATAAGTTATTTTTAGATATTTCTTCTGGACTCACCCAACTTACCCAATTACATGAATTGCTAAATCAAAGGGATTCATCTAACCATCTAACTAGCTGTTACTCTAATTGTGGTGGTTTCTCTAACACTGTACAAACTTACAATGAGCTCTCTACAAAGATTCAGGGCATGTGCAAATCTATCAGAGTGACACTAGATCAACATATTATCAGGGAAGAACTTGAATTATGGCCATTGTTTGATAAACACTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTCGTATAATTGGTACTACAGGGGCAGAGGTTCTCCAATCAATGCTGCCGTGGGTTACTTCTGCTCTCACACAAGATGAGCAAAACAAAATGATAGACACATGGAAGCAGGCTACCAAAAACACCATGTTCAATGAGTGGCTTGATGAATGGTGGACAGGACCTGATTCACCTGTGAATATCACTACATCCAGAGACCATTCACTAGGTACCGATGCCTATGAAGACTCAGAGCATGACTTTCAAGCCTTCAGGCCTGGATGGAAAGACATATTCAGGATGAACCAGAATGAACTTGAATCAGAAATAAGAAAGGTTTCTAGAGATTCAACTCTTGATCCAAGAAGAAAAACATATCTTATTCAGAATCTAATGACCAGTCGTTGGATAGCTTCTCAGCAGAAGTTGTCTCAAGCAGCTGGCGGTGAATCTTCAAACAGAGAAGATTTATTGGAAACATTACCTTCATTTCGTGATCCAGAGAAAAAAGTCTTTGGTTGTGAGCATTACAAAAGAAATTGCAAACTCCGCGCTGCTTGCTGTGGGAAACTATTCACGTGTAGGTTCTGCCATGATGAAGTTAGTGACCATTCAATGGATAGGAAGGCTACAACCGAGATGATGTGCATGTGCTGTCTTCAAATACAGCCTGTTGGACCAGTTTGTACAACACCTTCCTGTGGTAGTCTCTTAATGGCAAAGTACTATTGTAGTGTTTGCAAATTTTTTGATGATGAAAGGACGGTTTATCATTGCCCTTTCTGCAATCTATGTCGTCTGGGAAAGGGACTCGGTGTTGACTTCTTTCATTGCATGCAATGTAATTGTTGTTTGTCAATGAAATTGGATGATCACCTATGCCGGGAAAAGGGCTTAGAAACAAACTGTCCCATCTGCTGTGATTTTTTGTTCACATCCAGTGCATCTGTCAGAGCTCTCCCTTGTGGACATTTCATGCATTCTGCTTGCTTTCAGGCATACGCATGCAGCCACTACATCTGTCCAATCTGTAGCAAATCTATGGGGGATATGGCGGTTTACTTTGGCATGCTTGATGCTCTATTGGCTTCTGAGGAGCTCCCAGAAGAATTTCGGAATCGACGTCAGGATATACTTTGTAATGACTGCCATGAGAAGGGTACTGCTCCATTCCATTGGCTATACCACAAGTGTGGGTTTTGCGGATCTTACAACACAAGGAAAATTTGA 3684 0.421 MATTHSQAGGGGGGGGGAVATMPVAATPTSTAATGCSSLLLQSPILIFSLFHKAISSELRSLHRASLDFVSDPSHLISFSRRCHFLRTIYKHHCNAEDQVIFPALDKRVKNVARTYFLEHEGEGLLFDQLFKLLNSNLLDEESYRRELASCTGALRTSISQHLFKEAEQVFPLVIENFSSEEQASLIWQFLCSIPVKMMAEFLPWLASYISSDEHQDLLRCLGTVIPKEKLLHQVVFGWMKGQNIKCRSCTHNTEVQWQEAGTSKLPSYNDEKAYGNCGPSKTVKRKWVELSEDPTNYTIACPLDELLLWHKAIKHELNDLAETARKIRLSEECSGLSSFNGRLQFISEVCIFHSIAEDKVIFPAVNAEIYLLQDHANEELQFDNLRCLIETIRSAGANPSPEFFIRLSSHAEEIMNTILKHFENEETQVLPLARKLLSHQRQRELLYEGLCMMPLKLIECVLPWLVGSLNETEVRSFLQNMHMAAPASDHALVTLFSGWACNRHSMSSCFSSSVTGLCPARRLMEMEITSLSFCLCEHTFSHCKKSPYVQQDSTNGHVGPVKHGNPETRQDNDVSNLIITSETLNLPYNQSCCVPGLGLNPSHRGNGLLAQTKSLRALSDCPSAPFLNSSLFMWGTDIVSADNQFTTRPIDNIFKFHKAICIDLEYLDLESGKLNDCDEIFIQQFTGRFFLLWGLYRAHSNAEDDIVFPALESKENLHNVSHSYTLDHQQEDKLFLDISSGLTQLTQLHELLNQRDSSNHLTSCYSNCGGFSNTVQTYNELSTKIQGMCKSIRVTLDQHIIREELELWPLFDKHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMIDTWKQATKNTMFNEWLDEWWTGPDSPVNITTSRDHSLGTDAYEDSEHDFQAFRPGWKDIFRMNQNELESEIRKVSRDSTLDPRRKTYLIQNLMTSRWIASQQKLSQAAGGESSNREDLLETLPSFRDPEKKVFGCEHYKRNCKLRAACCGKLFTCRFCHDEVSDHSMDRKATTEMMCMCCLQIQPVGPVCTTPSCGSLLMAKYYCSVCKFFDDERTVYHCPFCNLCRLGKGLGVDFFHCMQCNCCLSMKLDDHLCREKGLETNCPICCDFLFTSSASVRALPCGHFMHSACFQAYACSHYICPICSKSMGDMAVYFGMLDALLASEELPEEFRNRRQDILCNDCHEKGTAPFHWLYHKCGFCGSYNTRKI* 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1453 1227 CDD RING-H2_Pirh2 1120 1163 - -
Lja2g1453 1227 SUPERFAMILY RING/U-box 1118 1173 - -
Lja2g1453 1227 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 36 1227 - -
Lja2g1453 1227 SMART ring_2 1121 1162 IPR001841 -
Lja2g1453 1227 Gene3D nmb1532 protein domain like 646 875 - -
Lja2g1453 1227 ProSiteProfiles Zinc finger CTCHY-type profile. 1057 1120 IPR017921 -
Lja2g1453 1227 Pfam CHY zinc finger 992 1067 IPR008913 GO:0008270
Lja2g1453 1227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1116 1165 IPR013083 -
Lja2g1453 1227 SUPERFAMILY CHY zinc finger-like 985 1048 IPR037274 GO:0008270
Lja2g1453 1227 CDD Hr-like 47 172 - -
Lja2g1453 1227 ProSiteProfiles Zinc finger RING-type profile. 1121 1163 IPR001841 -
Lja2g1453 1227 ProSiteProfiles Zinc finger CHY-type profile. 985 1054 IPR008913 GO:0008270
Lja2g1453 1227 Pfam Hemerythrin HHE cation binding domain 303 434 IPR012312 -
Lja2g1453 1227 Pfam Hemerythrin HHE cation binding domain 49 174 IPR012312 -
Lja2g1453 1227 SUPERFAMILY Zinc hairpin stack 1058 1113 IPR037275 -
Lja2g1453 1227 Gene3D nmb1532 protein domain like 307 449 - -
Lja2g1453 1227 Gene3D nmb1532 protein domain like 43 191 - -
Lja2g1453 1227 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1-LIKE 36 1227 - -
Lja2g1453 1227 CDD Hr-like 305 432 - -
Lja2g1453 1227 Pfam Ring finger domain 1120 1162 IPR001841 -
Lja2g1453 1227 Pfam Zinc-ribbon 1168 1225 IPR039512 -
Lja2g1453 1227 CDD Hr-like 654 810 - -
Lja2g1453 1227 Gene3D - 1191 1227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1453 Lja-Chr2 14001583 14009950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1453 8 1227 C2H2 Transcription Factor Family AT3G18290 58.643 0.0 1419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1453 2 14001583 14009950 Lja2g1453 2 14001583 14009950 ECH