Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1430 ATGGTTGAGCCTCCTATACCACCAGCTAATCAGATGAAGAAGTTGAAGAACAAGCACACTCCATCACTCACAAGAAAGTTGTGCATAATCTATGATGATCCTTATGCTACTGATTCTTCATCTGATGAAGAAGAGCATTTTGAGAAGAAGCCTAGAAAAATGAAGAGAATGGTGCGTGAGCTTGCTCTCCCCATTGTTTCAGCTAACAACACTGTCTCTCTTGATGAAACCAGCAATGAAAGTTCAAACAGCAAAGGACTGAACAAGAAGAGGGTTTTAGCCAAAACCCCTACATTGAGGAGGCAACCTTCTTGCAAATACAAAGGTGTTAGGATGAGGAAATGGGGGAAATGGGCTGCGGAGATTCGTGATCCGTTTAAGGGTGTGCGCCTATGGTTGGGAACTTACAACACTGCTGAAGAAGCTTCCCAAGCCTATGAGAAGAAAAAGCTTGAATTTGAAGTTATGGCCAAGGCTCTATCTGATGAGAACAACAACAAGAACAATGTTGTTGTTTCTGTTGAAAAGAATAGCTTCAACTACTGTGTTTCTTCTGCTGCAGCTTCTATATCAGACTCCAAATCTGCTACTTTGGATGACTCAGAGAGTGACTTGTCACATGCATCACCATCTTCTCAGGCTGAATTGGATAACACAGCTTCCAATTTGATTGACATTGGAATGGTTTCAAGCAAGGAAGCTGTTGAGACTAGTACTTTGAAGGCTGAACTTGAAATGCCAGATTTGAGTCTTTTGAACATGCCAGCACCACCCCTTTGTGGTGCTGCCACTCCATCTCAGGTTGAACTAGATTGGTTGACAATTGATGGTTTCGAGAGCTATGATATTGATGATCTTGTTGGTGGCCTTAAAGACATCCCAATCTGTGGTTTTGATGGTTCAGGTGAACTTCCTGATTTTAATTTTGATGACTTTGGTGCTGATGATGTTGCTGGTTTGATTGAAGAATCCCTCAATATACCGGTCCAATAA 993 0.4189 MVEPPIPPANQMKKLKNKHTPSLTRKLCIIYDDPYATDSSSDEEEHFEKKPRKMKRMVRELALPIVSANNTVSLDETSNESSNSKGLNKKRVLAKTPTLRRQPSCKYKGVRMRKWGKWAAEIRDPFKGVRLWLGTYNTAEEASQAYEKKKLEFEVMAKALSDENNNKNNVVVSVEKNSFNYCVSSAAASISDSKSATLDDSESDLSHASPSSQAELDNTASNLIDIGMVSSKEAVETSTLKAELEMPDLSLLNMPAPPLCGAATPSQVELDWLTIDGFESYDIDDLVGGLKDIPICGFDGSGELPDFNFDDFGADDVAGLIEESLNIPVQ* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1430 330 ProSiteProfiles AP2/ERF domain profile. 106 163 IPR001471 GO:0003700|GO:0006355
Lja2g1430 330 SMART rav1_2 106 170 IPR001471 GO:0003700|GO:0006355
Lja2g1430 330 Pfam AP2 domain 105 151 IPR001471 GO:0003700|GO:0006355
Lja2g1430 330 PRINTS Ethylene responsive element binding protein signature 107 118 IPR001471 GO:0003700|GO:0006355
Lja2g1430 330 PRINTS Ethylene responsive element binding protein signature 129 145 IPR001471 GO:0003700|GO:0006355
Lja2g1430 330 MobiDBLite consensus disorder prediction 196 216 - -
Lja2g1430 330 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 327 - -
Lja2g1430 330 SUPERFAMILY DNA-binding domain 106 153 IPR016177 GO:0003677
Lja2g1430 330 CDD AP2 105 153 IPR001471 GO:0003700|GO:0006355
Lja2g1430 330 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 10 327 - -
Lja2g1430 330 Gene3D AP2/ERF domain 105 160 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1430 Lja-Chr2 13740076 13742256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1430 10 311 AP2-EREBP Transcription Factor Family AT1G68550 33.439 1.17e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lja2g1430 AP2 5.7e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1430 2 13740076 13742256 Lja2g1430 2 13740076 13742256 ECH