Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1425 ATGAAGATTTTCGTGAAGACTCTCAAAGGATCACACTTCGAAATTGAAGTGAATCCCTCCGATACGGTTTCTGAAGTGAAGAAAAATATCGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGAAAAGTTCTCAAGGATGGTACTAGTTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTATTGTAATTATGCTGTCAAAGACAAAGAGCTCATCTGGTGAAGGATCTACCACTTCAACTGCACCTTTAGCCAAGGTTACGCAGACAAGTGCAGCTCCTACTTCAACCTCTGTGTCACCTGCTCCTCAAACACCTACTGCAACTAGGGATATGCCTACACCTGTTACTGTCCCAGCAGCTGCCCCTGCTCCAACTCCAGCTCCAGCTCTGGCGCCTACTCCTATATCTTCAGGCTCTGCTGTGTCAGTGTCTGATGTGTATGGGGAGGCTGCATCCAATCTTGTTGCTGGAAGCAACTTGGAAGGAATGATTCAACAAATCCTTGACATGGGTGGAGGAAGCTGGGATCGGGATACTGTTGTCCGTGCTCTTCGTGCTGCTTTCAACAATCCTGAAAGAGCTGTTGACTACTTGTATTCAGGCATACCTGAGCAAGCTGAAGCTCCACCTGTTACTCAAATGCCTGCAAGTGCTCAACCTGGAAATCCCCCAGCTGCTGCTCCACAACTAGCAAATGTTCCTTCTAGTGGACCAAATGCCAATCCTTTAGACCTCTTTCCCCAGGGCCTTCCTAATGTCGGTTCTGGCCCTGCTGGCGCTGGCTCTTTAGATTTTCTACGCAACAGTCAACAGTTCCAAGCCTTGCGCGCTATGGTGCAGGCTAATCCACAAATCTTGCAGCCTATGCTACAAGAACTTGGCAAACAAAATCCCCATCTTATGAGATTGATTCAAGATCATCAAGTTGATTTCCTTCGCCTGATAAATGAACCTGTGGAAGGCGGTGAAGGGAATATTCTAGGACAGCTGGCTGGTGCCGCCATGCCACAAGCAGTGTCTGTGACCCCTGAGGAAAGGGAAGCAATTGAACGTCTTGAAGCAATGGGTTTTGATCGTGCAACTGTCTTGGAGGTGTACTTCGCCTGTAACAAAAATGAGGAACTTGCTGCCAACTACCTTCTGGATCATATGCATGAGTTTGATGAACAATAA 1200 0.4667 MKIFVKTLKGSHFEIEVNPSDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTSLEENKVAENSFIVIMLSKTKSSSGEGSTTSTAPLAKVTQTSAAPTSTSVSPAPQTPTATRDMPTPVTVPAAAPAPTPAPALAPTPISSGSAVSVSDVYGEAASNLVAGSNLEGMIQQILDMGGGSWDRDTVVRALRAAFNNPERAVDYLYSGIPEQAEAPPVTQMPASAQPGNPPAAAPQLANVPSSGPNANPLDLFPQGLPNVGSGPAGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQDHQVDFLRLINEPVEGGEGNILGQLAGAAMPQAVSVTPEEREAIERLEAMGFDRATVLEVYFACNKNEELAANYLLDHMHEFDEQ* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1425 399 CDD UBA1_Rad23_plant 163 212 - -
Lja2g1425 399 Pfam XPC-binding domain 272 327 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lja2g1425 399 MobiDBLite consensus disorder prediction 218 237 - -
Lja2g1425 399 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 398 - -
Lja2g1425 399 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 398 - -
Lja2g1425 399 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lja2g1425 399 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 167 210 IPR015940 -
Lja2g1425 399 Gene3D - 264 328 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lja2g1425 399 MobiDBLite consensus disorder prediction 96 120 - -
Lja2g1425 399 SUPERFAMILY XPC-binding domain 269 334 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lja2g1425 399 SUPERFAMILY UBA-like 340 397 IPR009060 GO:0005515
Lja2g1425 399 PRINTS DNA repair protein Rad23 signature 348 364 IPR004806 GO:0006289
Lja2g1425 399 PRINTS DNA repair protein Rad23 signature 365 379 IPR004806 GO:0006289
Lja2g1425 399 PRINTS DNA repair protein Rad23 signature 380 395 IPR004806 GO:0006289
Lja2g1425 399 PRINTS DNA repair protein Rad23 signature 298 320 IPR004806 GO:0006289
Lja2g1425 399 SMART ubq_7 1 75 IPR000626 GO:0005515
Lja2g1425 399 Gene3D - 346 393 - -
Lja2g1425 399 Pfam UBA/TS-N domain 354 389 IPR015940 -
Lja2g1425 399 Pfam UBA/TS-N domain 172 207 IPR015940 -
Lja2g1425 399 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Lja2g1425 399 SMART CBM 270 313 IPR006636 -
Lja2g1425 399 SMART uba_6 169 209 IPR015940 -
Lja2g1425 399 SMART uba_6 354 391 IPR015940 -
Lja2g1425 399 Gene3D - 1 80 - -
Lja2g1425 399 TIGRFAM rad23: UV excision repair protein Rad23 1 397 IPR004806 GO:0006289
Lja2g1425 399 MobiDBLite consensus disorder prediction 96 132 - -
Lja2g1425 399 SUPERFAMILY UBA-like 166 220 IPR009060 GO:0005515
Lja2g1425 399 Gene3D - 162 212 - -
Lja2g1425 399 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 351 392 IPR015940 -
Lja2g1425 399 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lja2g1425 399 CDD UBA2_RAD23_plant 350 392 - -
Lja2g1425 399 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1425 Lja-Chr2 13689213 13697097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1425 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 1.26e-09 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1425 2 13689213 13697097 Lja2g1425 2 13689213 13697097 ECH