Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1422 ATGGCTTCCCCATTTCTCCCCACCACCACCTCCTCCGTCGCCGCCACCAATTCCACCACCCTCTCCTTCTCCTCCGCCCTCGCCTCACGCCGCGTCTCCTTCGCGGCATCAGCACCCTCGAAACCTCGCCGGCGGCCTTCCCAGTCAGTCCAATCCAAGATCAGGGAGATCTTCATGCCGGCGCTCAGCTCCACCATGACGGAGGGCAAAATCGTCTCCTGGGTGAAATCCGAGGGCGACGTCCTCTCCAAGGGTGACAGCGTCGTCGTCGTCGAGTCCGATAAGGCCGACATGGACGTCGAGACGTTCTACGATGGAATCCTCGCCGCCATTGTCGTCAACGAGGGCCAGACCGCCCCCGTCGGCGCCCCTATTGGCCTACTCGCTGAGACCGAGGAGGAAGTCGCTGAGGCCAAAGCTAAGGCTGCCAGTTCCGCTAATTCCGCCGCTTCCTCCGCCCCGCCAGTGGTTGAATCTTCAAGTCCTGCCCCGGCGGCCAAGGTGGTTTCTGACGGGCCGCGGAAGACGGTGGCGACGCCGTACGCCAAGAAGCTTGCCAAGCAGCACAAGGTGGATATTGGATCGGTGGTGGGGACTGGTCCGAATGGAAGGATTACTCCGGCTGATGTGGAGGCTGCTGCTGGAATTAAGCCAGCTGCGAGCAATGCGGCTCCCGCTGTGGTGGCTGCTCCAGCTCCGGCGGCTGCCCCGCCTCCAATTCCTGGGTCTAGTGTTGTCCCCTTCACGACAATGCAGTCCGCAGTTGCCAAGAACATGTTGGAGAGTCTCTCGGTGCCTACATTCCGTGTTGGGTACCCTGTTACCACTGATGCACTTGATGCCCTCTATGCGAAGGTGAAGCTGAAGGGTGTGACGATGACGGCGATTCTAGCCAAGGCCGCTGCGATGGCACTGGCTCAACATCCAGTGGTGAATGCCTCCTGTAAAGATGGGAAAAGCTTTACATATAATAGCAGCATTAACATTGCTGTAGCCGTGGCAATCAATGGTGGTTTGATTACTCCTGTTCTTCAGGATGCTGATAAGTTGGACCTCTATCTTTTGTCCCAAAAATGGAAAGAGTTAGTGGATAAAGCTCGTTCTAAGCAATTGCAGCCTCACGAGTATAATTCAGGAACATTTACCCTTTCAAATTTGGGAATGTTTGGAGTTGACAGGTTTGATGCTATACTACCTCCAGGCCAGGGGGCTATCATGGCTGTTGGAGCATCTAAGCCTACTGTTCTGGCAGACAAGGATGGATTCTTCAGTGTAAAAAACAAAATGCTGGTGAATGTAACTGCTGATCACAGAATAATCTATGGAGCAGACTTGGCTGCATTCCTTCAGACGTTCACAAAAATTATTGAAAATCCTGAAAGCCTAACATTGTAG 1395 0.5455 MASPFLPTTTSSVAATNSTTLSFSSALASRRVSFAASAPSKPRRRPSQSVQSKIREIFMPALSSTMTEGKIVSWVKSEGDVLSKGDSVVVVESDKADMDVETFYDGILAAIVVNEGQTAPVGAPIGLLAETEEEVAEAKAKAASSANSAASSAPPVVESSSPAPAAKVVSDGPRKTVATPYAKKLAKQHKVDIGSVVGTGPNGRITPADVEAAAGIKPAASNAAPAVVAAPAPAAAPPPIPGSSVVPFTTMQSAVAKNMLESLSVPTFRVGYPVTTDALDALYAKVKLKGVTMTAILAKAAAMALAQHPVVNASCKDGKSFTYNSSINIAVAVAINGGLITPVLQDADKLDLYLLSQKWKELVDKARSKQLQPHEYNSGTFTLSNLGMFGVDRFDAILPPGQGAIMAVGASKPTVLADKDGFFSVKNKMLVNVTADHRIIYGADLAAFLQTFTKIIENPESLTL* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1422 464 Pfam e3 binding domain 177 211 IPR004167 GO:0016746
Lja2g1422 464 ProSiteProfiles Peripheral subunit-binding (PSBD) domain profile. 177 214 IPR004167 GO:0016746
Lja2g1422 464 CDD lipoyl_domain 56 128 - -
Lja2g1422 464 ProSitePatterns 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 79 108 IPR003016 -
Lja2g1422 464 SUPERFAMILY Single hybrid motif 53 147 IPR011053 -
Lja2g1422 464 Pfam 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 244 463 IPR001078 GO:0016746
Lja2g1422 464 Gene3D - 173 215 IPR036625 GO:0016746
Lja2g1422 464 Gene3D - 227 463 IPR023213 -
Lja2g1422 464 PANTHER DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 4 OF PYRUVATE DEHYDROGENASE COMPLEX, CHLOROPLASTIC 17 464 - -
Lja2g1422 464 PANTHER DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED 17 464 IPR045257 GO:0006086|GO:0045254
Lja2g1422 464 SUPERFAMILY Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 170 214 IPR036625 GO:0016746
Lja2g1422 464 SUPERFAMILY CoA-dependent acyltransferases 231 462 - -
Lja2g1422 464 Coils Coil 128 148 - -
Lja2g1422 464 Pfam Biotin-requiring enzyme 56 126 IPR000089 -
Lja2g1422 464 MobiDBLite consensus disorder prediction 145 173 - -
Lja2g1422 464 Gene3D - 49 154 - -
Lja2g1422 464 ProSiteProfiles Biotinyl/lipoyl domain profile. 54 132 IPR000089 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1422 Lja-Chr2 13661353 13664783 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1422 16 464 Acyl Lipid Metabolism Gene Families AT3G25860 75.589 0.0 651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1422 2 13661353 13664783 Lja2g1422 2 13661353 13664783 ECH