Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1418 ATGGGTAAAAAGCTTGATGCTCTTCTTGGCAGAACCTTCAAGGTTTCAAAGTTCAAGCCAACTGTGAACCTTGCCATCTCACGCCTTGCTGTTCTCAAGAACCAGCGTCAGGTTCGTTTCAGACAAGCCCGTTCAGATGTCCTTCAACTTCTCCAAGCCGGTCAACATGAACGAGCTCTGCTTCGAGTTGAGCATGTGATCAAGGATCAAAATATGTTGGATATGTACGACAAGATTGAAGGATACTGCAGTCTATTGATTGAAAGGATCCACCTCATTGAACAAGAAAGAGAATGTCCTGAGGAACTAAAGGAGGCAGCATCAGGATTACTCTATGCAGCTTCTAGGTGTGGAGATTTTCCAGAGATTCAAGAGATTCGTGCAGTTTTGACCTCTCGGTTTGGTAAGGACTTTGCTGCTCGTGCTATTGAGTTAAGGAATAACTGTGGAGTCCATCCCCAGATGATACAAAAGTTGTCAACAAGGATGCCAAGCTTGGAGAGTAGAATGAAGGCACTCAAAGATATTGCTTCTGAGAATGGAATTGTTCTACAGCTTGAAGAAGCTTCTTCTCCTGTTGAGGAAAACCAGCATAAACATGAGATGAAGGAAGAGATTATCAGAATTTTGCCTAATAGAGGAAAAGATGAGGAGTTAACTGATTCCTTCAAGGTCAGGAAAAAGTACAAGGACGTAGCTGATGCAGCACAAGCAGCTTTTGAGTCCGCAGCATATGCTGCAGATGCGGCAAGGGCAGCTATGGAACTCTCACGACCTGGATCTGGATCACATGATCCTGACGATCATAGTAGTCCAAGCTTCCAGCCAAGAAAAGTGTTGGATGGACATGATTCTGTGAAACCTCAGCCACAGGAAGACAAGGAAATCCGTAGGGGATCTCAAGGTGAAAATTTTAACAAGGAAATGGACGAGTTTAATAAGCAAAAAGACATTTTAAGTTGCAATTCAGCTGATGAGATTTTGAAGGGGGGTGTTGCCTCAGTGGATGCTGAAACTGAGGCTGATCCTTTTGAAAATGAAATGGTTTTTGATGAGAGTGATGATGAAACTGATAAAAAACAGAACAGAATTTTATCTTCTAAGCAGATATCTTCAAGGTATGATGCTGGTATAGAGGTTGGATCAGGTTCTAGTAACCTAGTTATAAATACAATATCAGGATCCAAGAAACAGAGTGCGCCTCTGTTGAATTTGGAGAAGAGGCCAATTTCAGTAAGGACTAGATGA 1248 0.4239 MGKKLDALLGRTFKVSKFKPTVNLAISRLAVLKNQRQVRFRQARSDVLQLLQAGQHERALLRVEHVIKDQNMLDMYDKIEGYCSLLIERIHLIEQERECPEELKEAASGLLYAASRCGDFPEIQEIRAVLTSRFGKDFAARAIELRNNCGVHPQMIQKLSTRMPSLESRMKALKDIASENGIVLQLEEASSPVEENQHKHEMKEEIIRILPNRGKDEELTDSFKVRKKYKDVADAAQAAFESAAYAADAARAAMELSRPGSGSHDPDDHSSPSFQPRKVLDGHDSVKPQPQEDKEIRRGSQGENFNKEMDEFNKQKDILSCNSADEILKGGVASVDAETEADPFENEMVFDESDDETDKKQNRILSSKQISSRYDAGIEVGSGSSNLVINTISGSKKQSAPLLNLEKRPISVRTR* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1418 415 Gene3D - 6 193 IPR042277 -
Lja2g1418 415 MobiDBLite consensus disorder prediction 256 306 - -
Lja2g1418 415 PANTHER IST1 FAMILY MEMBER 8 415 IPR005061 GO:0015031
Lja2g1418 415 Coils Coil 156 176 - -
Lja2g1418 415 PANTHER REGULATOR OF VPS4 ACTIVITY IN THE MVB PATHWAY PROTEIN 8 415 - -
Lja2g1418 415 Pfam Regulator of Vps4 activity in the MVB pathway 19 182 IPR005061 GO:0015031
Lja2g1418 415 MobiDBLite consensus disorder prediction 261 306 - -
Lja2g1418 415 MobiDBLite consensus disorder prediction 338 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1418 Lja-Chr2 13632662 13634623 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1418 2 13632662 13634623 Lja2g1418 2 13632662 13634623 ECH