Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1415 ATGTCTATGGTTGATGAGCCACTATATCCAATAGCAGTGCTTATAGACGAGCTGAAAAACGATGACATCCAGCTGCGGTTGAACTCAATTCGCAAGCTATCCACGATTGCTCGTGCGCTTGGGGAGGAGCGAACTCGTAAGGAGTTGATACCGTTTTTGGGTGAGAATAATGATGATGATGACGAGGTGCTTCTTGCAATGGCGGAAGAGTTGGGGGTTTTCATTCCGTTTGTTGGGGGAGTGGAGCATGCCCACGTGTTGCTCCCGCCTTTGGAGACGCTTTGCACTGTTGAGGAAACGTGTGTGAGGGATAAAGCTGTGGAATCACTTTGTCGAATTGGACCTCAGATGAGGGAGAGTGATTTGGTTGAGTATTTCATTCCTCTGGTCAAGAGATTGGCAGCAGGTGAATGGTTCACTGCCCGAGTGTCTGCATGTGGACTAGTTCATATTGTTTACCCAAGTGCACCAGAAATGTCAAAGACAGAGTTGAGATCAATATACAGTCAGCTGTGTCAAGATGACATGCCAATGGTTAGAAGGTCTGCTGCATCAAATCTTGGGAAGTTTGCTGCAACTGTTGAATATGCTCATTTGAAGGCAGACATCATGTCAATTTTTGAGGATCTTACTAAGGATGATCAAGACTCCGTTAGATTGTTGGCTGTGGAGGGTTGTGCTGCTCTTGGCAAGCTGTTGGAGCCACAAGACTGTATCACTCACATACTTCCAGTGATCGTTAACTTCTCGCAGGATAAGTCTTGGCGTGTGCGATATATGGTTGCAAATCAATTGTATGAGCTCTGCGAAGCTGTTGGCCCTGAACCTACCAGAACGGAATTGGTCCCTGCTTATGTGCGGTTGCTTCGAGACAATGAGGCTGAAGTACGGATTGCAGCTGCAGGGAAAGTGACAAAGTTTTGCCGGATTTTAAATCCAGATCTTGCAATTCAGCATATTCTTCCTTGTGTGAAGGAATTGTCATCTGATTCTTCGCAGCATGTTCGCTCTGCTCTGGCATCAGTAATAATGGGAATGGCTCCAGTATTAGGAAAGGATGCAACAATTGAGCAGCTTCTTCCTATTTTCCTTTCCCTTTTGAAGGATGAATTTCCTGATGTGCGCCTAAACATCATAAGCAAGCTTGATCAAGTGAATCAGGTTATTGGAATCGATTTGTTATCTCAATCTTTACTACCAGCCATTGTTGAGCTTGCTGAGGACAGGCATTGGAGGGTTCGGCTTGCAATCATAGAGTATATACCCTTATTGGCAAGCCAATTGGGGGTTGGGTTTTTTGACGATAAGCTTGGTGCTCTTTGCATGCAGTGGTTACTGGACAAGGTTCATTCAATTCGTGAGGCAGCTGCTAACAACTTGAAGCGCCTGGCAGAAGAATTTGGTCCTGAATGGGCTATGCAGCACATAATTCCACAGGTTTTGGAGATGATTAGCAATCCACACTATTTGTATCGGATGACCGTTCTTTATGCTATCTCTTTGCTTGCTCCTGTCATGGGCTCTGAAATCACAAGCTCAAAATTATTGCCTGTTGTTGTTGCTGCATCAAAAGACAGAGTACCCAATATTAAGTTCAACGTGGCAAAGGTCTTGGAGTCCATCTTCCCCATAGTTGATCAACCCGTTGTGGAAAAGACAATCCGTCCAAGTCTTGTCGAGCTCAGTGAGGATCCTGATGTTGATGTAAGATTTTTTGCCAATAAAGCTCTCACGGCCATTGATCATGTCATGATGTCTAGCTAG 1764 0.4501 MSMVDEPLYPIAVLIDELKNDDIQLRLNSIRKLSTIARALGEERTRKELIPFLGENNDDDDEVLLAMAEELGVFIPFVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGPQMRESDLVEYFIPLVKRLAAGEWFTARVSACGLVHIVYPSAPEMSKTELRSIYSQLCQDDMPMVRRSAASNLGKFAATVEYAHLKADIMSIFEDLTKDDQDSVRLLAVEGCAALGKLLEPQDCITHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPDLAIQHILPCVKELSSDSSQHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLLDKVHSIREAAANNLKRLAEEFGPEWAMQHIIPQVLEMISNPHYLYRMTVLYAISLLAPVMGSEITSSKLLPVVVAASKDRVPNIKFNVAKVLESIFPIVDQPVVEKTIRPSLVELSEDPDVDVRFFANKALTAIDHVMMSS* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1415 587 ProSiteProfiles HEAT repeat profile. 87 125 IPR021133 -
Lja2g1415 587 ProSiteProfiles HEAT repeat profile. 554 587 IPR021133 -
Lja2g1415 587 ProSiteProfiles HEAT repeat profile. 320 358 IPR021133 -
Lja2g1415 587 ProSiteProfiles HEAT repeat profile. 203 241 IPR021133 -
Lja2g1415 587 ProSiteProfiles HEAT repeat profile. 476 514 IPR021133 -
Lja2g1415 587 Gene3D - 3 582 IPR011989 -
Lja2g1415 587 Coils Coil 446 466 - -
Lja2g1415 587 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A 65 KDA REGULATORY SUBUNIT 1 587 - -
Lja2g1415 587 ProSiteProfiles HEAT repeat profile. 164 202 IPR021133 -
Lja2g1415 587 Pfam HEAT repeats 361 461 - -
Lja2g1415 587 Pfam HEAT repeat 242 270 IPR000357 GO:0005515
Lja2g1415 587 ProSiteProfiles HEAT repeat profile. 515 553 IPR021133 -
Lja2g1415 587 SUPERFAMILY ARM repeat 8 579 IPR016024 -
Lja2g1415 587 PANTHER PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT A, PUTATIVE-RELATED 1 587 - -
Lja2g1415 587 ProSiteProfiles HEAT repeat profile. 242 280 IPR021133 -
Lja2g1415 587 ProSiteProfiles HEAT repeat profile. 398 436 IPR021133 -
Lja2g1415 587 ProSiteProfiles HEAT repeat profile. 281 319 IPR021133 -
Lja2g1415 587 ProSiteProfiles HEAT repeat profile. 10 48 IPR021133 -
Lja2g1415 587 ProSiteProfiles HEAT repeat profile. 359 397 IPR021133 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1415 Lja-Chr2 13618355 13624389 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1415 2 13618355 13624389 Lja2g1415 2 13618355 13624389 ECH