Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1413 ATGCAAGGATTCAAGACAGCTCAAGGAAATTCTCACCTCTATTGCCACCCCTCCTCCTTCTTGCTGAGGGGAGATGATACTAGTAGAAACCATACGCGTTTCTCTGATCTTGGGGAGCTTCAACATTCCTCTAATATCTTTCAACAAGATGATGCTGTTGATTTAAGCTCAAGTAACTTACCATGCTCCATGTATAGTGTAAAGTCTTGCAATGTTGTTGGTGGTGGCAGTAACATGCAGTATGGGACACTGAACACGAATCTTGGGTCGGCAGAGATTGTTTCAACTGGGGCAGGGTGCTTGGAGACAGGGCAGCAGCTCATGTATCACAAGGAAATCTCCATGGCCACCATGCCTATGGGGAATGGTCATGTTGAGAATTGGGCTGATTCTTCAGGCATGGCAGATAATAGCCAACAGACTGATGACACTTCCACAGATGTTGATACTGATGATAAAATCCAATCCAATAGAGATAAACGTGGGACACATATGGTTGTTCACTCCAGGGATCAGACCAAGTCCAAACCTGAAGATCAGAAGATCCTTCGTAGGCTGGCTCAGAATCGCGAGGCTGCTAAGAAGAGTAGATTAAGGAAAAAGGCATACGTGCAGCAGTTAGAGAACAGCCGACTCAAGCTTGTGCAATTAGAGCAAGAGCTTCAAAGAGCACGTCAGCAGGGTGTATTTATGGCATCCCCTGGGGATCAAAGTCATTTGGCTGTTGGAGGAGCAAATGGTGCCTCAGCCTTCGATATGGAATATGCTCATTGGGTTGATGAGCATCAACGCCTCCTCACTGATCTAAGATCAGCTTTAAATTCTCAGATGGGTGATAATGAACTACATCTTCTTGTTGATGGTGTCATGGCACATTATGATGAACTATTCAGGTTAAAGAGCCTAGGGGCGAAAGCTGATGTATTTCACATGCACAGTGGGCTGTGGAAGACACCTGCTGAAAGATGTTTCATGTGGCTTGGTGGATTCCGCTCCACTGAACTTCTCAAGATAGTTAAAAACCACCTTGAGCCGTTAACAGAACCGCAGTTGATGGGCATTGACAATCTGCTGAGGTGTGCCCAGCAGGGTGAGGATGCATTAACTCAAGGCATGGAAGCATTGCAGCAAGCTCTTGTAGACACACTTTCCTCCACCTCCCTAGGACCTGCTGGTGCTGGAAATGTTGCTGATTACATGGGCCAAATGGCAATTGCAATGGGCAAGCTGGCCACATTGGAGAGTTTCCTTCACAGTGCTGATCTCGTGAAGCAACAGACTTTACAACAGTTGCAAAGAATATTGACGACGCGGCAGATGGCTCGTGCTCTCCTTGTCAGAAATGATTACATTTCAAGATTACGAGCTCTTAGCTCATTATGGTTAGCGCGCCCTAGAGAGAGCTCTGTGATGAGTAGCTTGCCACCCTCAAATATAGAATAG 1443 0.4629 MQGFKTAQGNSHLYCHPSSFLLRGDDTSRNHTRFSDLGELQHSSNIFQQDDAVDLSSSNLPCSMYSVKSCNVVGGGSNMQYGTLNTNLGSAEIVSTGAGCLETGQQLMYHKEISMATMPMGNGHVENWADSSGMADNSQQTDDTSTDVDTDDKIQSNRDKRGTHMVVHSRDQTKSKPEDQKILRRLAQNREAAKKSRLRKKAYVQQLENSRLKLVQLEQELQRARQQGVFMASPGDQSHLAVGGANGASAFDMEYAHWVDEHQRLLTDLRSALNSQMGDNELHLLVDGVMAHYDELFRLKSLGAKADVFHMHSGLWKTPAERCFMWLGGFRSTELLKIVKNHLEPLTEPQLMGIDNLLRCAQQGEDALTQGMEALQQALVDTLSSTSLGPAGAGNVADYMGQMAIAMGKLATLESFLHSADLVKQQTLQQLQRILTTRQMARALLVRNDYISRLRALSSLWLARPRESSVMSSLPPSNIE* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1413 480 MobiDBLite consensus disorder prediction 146 178 - -
Lja2g1413 480 PANTHER TRANSCRIPTION FACTOR TGA9 42 467 - -
Lja2g1413 480 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 184 199 IPR004827 GO:0003700|GO:0006355
Lja2g1413 480 Gene3D - 180 229 - -
Lja2g1413 480 Pfam Seed dormancy control 266 340 IPR025422 GO:0006351|GO:0043565
Lja2g1413 480 CDD bZIP_HBP1b-like 181 233 - -
Lja2g1413 480 SUPERFAMILY Leucine zipper domain 182 224 IPR046347 GO:0003700|GO:0006355
Lja2g1413 480 SMART brlzneu 177 240 IPR004827 GO:0003700|GO:0006355
Lja2g1413 480 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 179 223 IPR004827 GO:0003700|GO:0006355
Lja2g1413 480 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 42 467 - -
Lja2g1413 480 Pfam bZIP transcription factor 181 221 IPR004827 GO:0003700|GO:0006355
Lja2g1413 480 MobiDBLite consensus disorder prediction 122 178 - -
Lja2g1413 480 ProSiteProfiles DOG1 domain profile. 248 464 IPR025422 GO:0006351|GO:0043565
Lja2g1413 480 Coils Coil 200 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1413 Lja-Chr2 13588767 13593507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1413 4 467 bZIP Transcription Factor Family AT1G68640 54.071 4.22e-152 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lja2g1413 DOG1 4.8e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1413 2 13588767 13593507 Lja2g1413 2 13588767 13593507 ECH