Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1407 ATGCAGCACACACCAATGACAACAAGAACAACACTCACTTCCCTCATTCTCTTCCTCTTCTGCATTTCCCCATTAACAACAACAGTCCACACTCGAACCACACCTCATACCCCCAAAACGACACTCCTCAACGTCGTTGCATCCATTCAACAAACACACAATGCCGTCACCTCAAACCGCCACCAAATACTGCAACAACCGCAGCAAACTGAATCACCCTCATCACTCTCCCTTCAACTCCATTCTCGAGTCTCCATTCAAAAACCCTCACACGACAACTACAAATCTCTCACCCTATCTCGACTCGACCGTGACTCAGCCCGAGTCACCGCCCTGCAAACTCGCCTGAATCTCGCCACCAACCGCATCTCTCAATCATTCAGCTCCGAGAAACTGAAAGCACCAATCGTCTCCGGAACTAGCCAGGGAAGCGGCGAGTACTTCCTTCGAGTCGGAATCGGAAAACCGCCGACTCCGGCATACGTGGTGGCCGACACCGGGAGTGACGTCAGCTGGATCCAATGCTCGCCGTGTTCTGACTGCTACGAACAATCCGACCCGGTTTTCAACCCGGCTTCTTCCACCTCCTACTCCCAGATCCACTGCGGAACGCCGCAGTGCAAGTCGCTGGACCTCTCCGAGTGCCGCAATGGAACGTGCCTCTACGAGGTTTCCTACGGCGATGGATCCTACACCGTCGGGGAGTTTGTTACAGAAACGGTTACTCTCGGGTCGAGTTCAATTGACAGTGTCGCCATAGGGTGTGGCCACCATAACGAAGGTTTGTTCGTCGGCGCCGCCGGGTTGCTCGGATTAGGCGGCGGGAAACTCTCTTTTCCGGCGCAGATAAACGCCACGTCGTTCTCCTACTGCCTCGTCGACCGTGACTCCGATTCGGCTTCCACGCTGGAGTTTGACTCAGCATTCCCGCGAAACACCGTCACCGCGCCGTTACGGCGGAATCCGGATCTGGACACGTTTTACTACCTTGGCCTGACCGGGCTCAGCGTCGGCGGTGAGGTTCTTCCGATTCCGGAGGCGAGTTTCGAGGTTGACGCTGTCGGTGAAGGAGGAATCATTGTGGATTCCGGCACGGCGGTGACTCGGTTGCGGAGCGAAGTGTACGACGAACTCCGGGACGCGTTTAAGAGGGGGGCGCGGGGGTTGCCGGCGGCGGAGGGTGTGTCGTTGTTTGACACGTGCTACGACTTGTCGTCGAAGACGAGCGTGGAGGTTCCGACGGTGGCGTTACATTTTCCCGATGGGAAGGAGTTACCGTTACCGGCGAAGAATTACCTGATACCGGTTGACTCGGTTGGGACGTTTTGTTTTGCTTTCGCGCCAACGACGTCGTCGCTGTCGATCATTGGGAACGTGCAGCAGCAGGGGACACGTGTCGGTTTCGATATTGCTAACTCTCTCGTTGGATTCTCTGCCAATAGTTGCTAG 1449 0.559 MQHTPMTTRTTLTSLILFLFCISPLTTTVHTRTTPHTPKTTLLNVVASIQQTHNAVTSNRHQILQQPQQTESPSSLSLQLHSRVSIQKPSHDNYKSLTLSRLDRDSARVTALQTRLNLATNRISQSFSSEKLKAPIVSGTSQGSGEYFLRVGIGKPPTPAYVVADTGSDVSWIQCSPCSDCYEQSDPVFNPASSTSYSQIHCGTPQCKSLDLSECRNGTCLYEVSYGDGSYTVGEFVTETVTLGSSSIDSVAIGCGHHNEGLFVGAAGLLGLGGGKLSFPAQINATSFSYCLVDRDSDSASTLEFDSAFPRNTVTAPLRRNPDLDTFYYLGLTGLSVGGEVLPIPEASFEVDAVGEGGIIVDSGTAVTRLRSEVYDELRDAFKRGARGLPAAEGVSLFDTCYDLSSKTSVEVPTVALHFPDGKELPLPAKNYLIPVDSVGTFCFAFAPTTSSLSIIGNVQQQGTRVGFDIANSLVGFSANSC* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1407 482 ProSiteProfiles Peptidase family A1 domain profile. 147 478 IPR033121 -
Lja2g1407 482 SUPERFAMILY Acid proteases 140 482 IPR021109 -
Lja2g1407 482 PANTHER ASPARTYL PROTEASES 19 482 IPR001461 GO:0004190|GO:0006508
Lja2g1407 482 Gene3D Acid Proteases 119 305 IPR021109 -
Lja2g1407 482 Gene3D Acid Proteases 306 482 IPR021109 -
Lja2g1407 482 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 19 482 - -
Lja2g1407 482 Pfam Xylanase inhibitor C-terminal 328 478 IPR032799 -
Lja2g1407 482 Pfam Xylanase inhibitor N-terminal 147 305 IPR032861 -
Lja2g1407 482 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 162 173 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1407 Lja-Chr2 13532143 13533776 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1407 137 482 Miscellaneous Gene Families AT1G77480 26.110 8.40e-22 95.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1407 2 13532143 13533776 Lja2g1407 2 13532143 13533776 ECH