Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1399 ATGCTATTCTCCCAGAAAATGCAACCCCATAAGATGGGGTCTCGTGAGTATATCCAAGCATTGGAGGAAGAAAGGAAGAAAATCCAGGTTTTCCCTAGAGAGCTTCCTCTTTCATTGGAGCTTGTAACACAAGCCATTGAAGCGTGTAGGCAGCAGTTATCTGGAACGACGACGGATTACAATCTGAACAATGGCCAATCGGAGTGTTCAGGGCAGACATCAACGGAGGATGGTCCTGTTTTTGAGGAGTTTTTTCCTATGAAGAAAAGGGCAGCTCCTGATTGTGATGAAAAAGATGAGGATGATGATGATGATGAACTACATTCTCATAAAAAGAAATCAGATTGGCTCAGATCTGTGCAGTTGTGGAATCCTAATCCTTCAACAACTAAAGAGGATTTGCCTAGGAAGACTAATGTTGTGGAAGTGAAGAGGAATGGTGGTGCGTTTCATCCATTCCATAGAGAGGAAAGTGGTGTTGGAAAGGCTAGTAATGTTGTATCTGCAGCTTGTAAAGCACCGTCTTCACCGCCGGTACCTGCTACGAGTTCTACAGGACCAGTTAGAGTAGATAGCAATGATGGAGGCAGTAAAAGAGATGAGAAAGGACAGGCTCAGAGGAAGCAGCGCCGGTGCTGGTCTCAGGAATTGCACAAGCGCTTCTTGCATGCCCTTCAGCAGCTTGGTGGTCCAGATGTTGCCACACCAAAACAGATCAGGGAGCATATGAAAGTTGATGGCCTCACCAATGATGAAGTCAAAAGTCATTTACAGAAATTTCGCCTGCACACAAGAAGAAGCCCTGTAATTCACAACAATGCTAATTCACAAACAACTCCTTTGTTCCTTGTTGGGAACATTTATGTTCAACCATCAGAATATGGTGCAGTAGCCACCACAACAACAGGATCAGGGGAATTGACCAAGGTTACTGCTCCATCTGGAATTTATGCACCTGTGGCTGCACATCCTCCAGCAACTGCAGTTATGAAGAGTCCACAATTGAAGCAATTAGAGGTGTCCTCAAATTCAGAAGAAAGGACCAATCACAGTGAAGGGGCTGTTCATTCAAACTCTGCTGCCTCATCATCCTCCACACACACCACCACAACTTCACCTAGGTGTTGA 1128 0.4512 MLFSQKMQPHKMGSREYIQALEEERKKIQVFPRELPLSLELVTQAIEACRQQLSGTTTDYNLNNGQSECSGQTSTEDGPVFEEFFPMKKRAAPDCDEKDEDDDDDELHSHKKKSDWLRSVQLWNPNPSTTKEDLPRKTNVVEVKRNGGAFHPFHREESGVGKASNVVSAACKAPSSPPVPATSSTGPVRVDSNDGGSKRDEKGQAQRKQRRCWSQELHKRFLHALQQLGGPDVATPKQIREHMKVDGLTNDEVKSHLQKFRLHTRRSPVIHNNANSQTTPLFLVGNIYVQPSEYGAVATTTTGSGELTKVTAPSGIYAPVAAHPPATAVMKSPQLKQLEVSSNSEERTNHSEGAVHSNSAASSSSTHTTTTSPRC* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1399 375 MobiDBLite consensus disorder prediction 177 191 - -
Lja2g1399 375 Pfam Myb-like DNA-binding domain 210 259 IPR001005 -
Lja2g1399 375 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 4 372 - -
Lja2g1399 375 MobiDBLite consensus disorder prediction 193 211 - -
Lja2g1399 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 265 IPR017930 -
Lja2g1399 375 MobiDBLite consensus disorder prediction 57 79 - -
Lja2g1399 375 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 372 IPR044787 GO:0003700|GO:0006355
Lja2g1399 375 MobiDBLite consensus disorder prediction 353 375 - -
Lja2g1399 375 Gene3D - 207 265 - -
Lja2g1399 375 MobiDBLite consensus disorder prediction 57 77 - -
Lja2g1399 375 MobiDBLite consensus disorder prediction 336 375 - -
Lja2g1399 375 MobiDBLite consensus disorder prediction 170 211 - -
Lja2g1399 375 MobiDBLite consensus disorder prediction 91 138 - -
Lja2g1399 375 MobiDBLite consensus disorder prediction 119 134 - -
Lja2g1399 375 SUPERFAMILY Homeodomain-like 206 266 IPR009057 -
Lja2g1399 375 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 208 263 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1399 Lja-Chr2 13441898 13444531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1399 1 344 G2-like Transcription Factor Family AT1G68670 47.802 1.18e-82 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja2g1399 Myb_DNA-binding 3.6e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1399 2 13441898 13444531 Lja2g1399 2 13441898 13444531 ECH