Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1398 ATGCAAGCTTATCATCACTCTTTCTCCTACATATCCTCTTGTGAACCTGATGAGGCTGTTGATGAAGCCTCCATCTCCCTCTCTCTTGGTCCTCCTGGCCAACACAACCCAAAAATCCCCTCCTCAAAGCACCCTGCCACCACCCTGCACCATCAGCAAAACCCTACCTCTGATGATGACCACAGTGGTGTAACAGTGGCTCTTCATATTGGCCTTCCCACAAACATTTCACCTACAACAGACACAACCCCCATCAGCAAACCTGATCATAATCAACATCATCATCTGGCCTCTTCAGCTCCTGTTCAGGGTCAGTATTGGATCCCTTCTCCTGCTCAAATCCTCATTGGACCAACCCAGTTCTCCTGCACTGTCTGCAACAAAATGTTCAACCGTTACAACAATATGCAGATGCATATGTGGGGACATGGATCACAGTACAGGAAAGGACCTGAATCACTAAGAGGAGCAAAACCAGCTTCTTCAATGCTGAGGCTACCCTGCTACTGTTGTGCAGAGGGTTGCAAGAATAACATAGATCACCCAAGGTCAAGGCCACTCAAGGACTTCAGGACCCTCCAGACACACTACAAGAGGAAGCACGGCGCGAAGCCGTTCGGGTGCAGGAAGTGCGGGAAGCCCTTCGCGGTCCGAGGCGATTGGAGGACACATGAGAAGAACTGCGGCAAGCTCTGGTTCTGCATCTGCGGCTCTGATTTCAAGCACAAGAGGTCCCTCAAGGACCATGTCCGTGCCTTTGGTGATGGCCACGCCCCACACACTGTGGAGAGCTGTGATCAGATGGGGGATGAACTTGACTTGTTTGGAGAGGATGAAGAGGATGAGGAATTAGAAGATGATGATGAAGATTTGTTTGATGATGATAACAACAATGCAGGTGGTGTTTGTTTTTAG 915 0.4962 MQAYHHSFSYISSCEPDEAVDEASISLSLGPPGQHNPKIPSSKHPATTLHHQQNPTSDDDHSGVTVALHIGLPTNISPTTDTTPISKPDHNQHHHLASSAPVQGQYWIPSPAQILIGPTQFSCTVCNKMFNRYNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQMGDELDLFGEDEEDEELEDDDEDLFDDDNNNAGGVCF* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1398 304 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Lja2g1398 304 PANTHER ZINC FINGER PROTEIN WIP6 5 298 - -
Lja2g1398 304 MobiDBLite consensus disorder prediction 40 61 - -
Lja2g1398 304 SUPERFAMILY beta-beta-alpha zinc fingers 117 142 IPR036236 -
Lja2g1398 304 MobiDBLite consensus disorder prediction 25 98 - -
Lja2g1398 304 SUPERFAMILY beta-beta-alpha zinc fingers 189 226 IPR036236 -
Lja2g1398 304 MobiDBLite consensus disorder prediction 72 86 - -
Lja2g1398 304 MobiDBLite consensus disorder prediction 276 295 - -
Lja2g1398 304 Pfam Zinc finger, C2H2 type 121 140 IPR013087 -
Lja2g1398 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
Lja2g1398 304 MobiDBLite consensus disorder prediction 276 304 - -
Lja2g1398 304 SMART c2h2final6 169 201 IPR013087 -
Lja2g1398 304 SMART c2h2final6 206 226 IPR013087 -
Lja2g1398 304 SMART c2h2final6 121 143 IPR013087 -
Lja2g1398 304 Gene3D Classic Zinc Finger 161 253 - -
Lja2g1398 304 PANTHER ZINC FINGER PROTEIN WIP2 5 298 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1398 Lja-Chr2 13419398 13421069 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1398 21 262 C2H2 Transcription Factor Family AT1G13290 70.612 3.75e-120 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja2g1398 zf-C2H2 0.012 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1398 2 13419398 13421069 Lja2g1398 2 13419398 13421069 ECH