Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1394 ATGGATGGATCAGGCAGTTGCATAGACGAAAGCACCACCACCGAATCACTCTCGATTACCTTGTCCCCGGCGATGAAACCGACAACTCCGCCGCCACCAAACAGCCTCTGCCGTGTCGGCAGCGGGGCAAGCGCGGTTGTGGATCCTGAAGGATCCGCCGGCGCCGGAGAAGCTGAATCCCGGAAGCTCCCGTCGTCGAAATACAAAGGCGTTGTGCCGCAGCCCAACGGGCGCTGGGGAGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTGGGGACATTCAACGAGGAGGACGAGGCCGCCAGGGCCTACGACGTCGCCGCGCAAAGGTTCCGCGGCAAGGACGCCGTGACTAATTTTAAGCCGCTCGCCGTCTCCGACGGCGGCGACTGCGGCGGCGACGATGATGATGCTGAGGCTGAGTTTCTTAACTCGCACTCGAAATCTGAGATCGTCGACATGCTGAGAAAGCATACTTACAATGACGAGCTGGAGCAGAGCAAGCGCAGCCGCGGACTCGTGGGCCGGAAACGCGCCGCCGGGGAAAATTTATCCGGTTCGGCGCAGGGCGCGTGTGTGAGGAAGGCGCGTGAGCCTCTGTTTGAGAAGGCAGTTACCCCGAGCGATGTAGGGAAGCTGAACCGTTTGGTGATACCGAAGCAGCATGCGGAGAAGCACTTTCCGTTACAGAGCGTGGGCGTGGCCGGGGGCGTGGCGGGAAACGTGTCCGCGGCGGCGAAGGGGGTGCTTTTGAACTTTGAGGATGTTGGAGGGAAAGTGTGGCGGTTTAGGTACTCGTATTGGAATAGTAGCCAGAGCTACGTGCTTACCAAAGGGTGGAGCCGGTTCGTTAAGGAGAAGTGCCTCAAAGCCGGTGACTCGGTTTGCTTCCATCGGTCAACCGGGCCAGACAGACAGCTCTTCATTGATTTTAAGGTCAGGAGGACCAATGCCAATGAAACAGCTGTGCTGTTCGGCTCGGTCGGACCTGTAGTTGAGCCGGTCCAAATGGTTCGGCTCTTCGGGGTTAACATTTTGAAACTGCCCGGATCAGATGCTAATGCTAATAACAATAATAATCACAATGCTGCTGCTCCTATGGCTGGGTGCTGCAATGGCAAGAGGAAAGAAATGGAACTGTTCACCTTTGAATGTATCAAGAAGCCTAAGATCATTGGAGCTTTGTAA 1191 0.5676 MDGSGSCIDESTTTESLSITLSPAMKPTTPPPPNSLCRVGSGASAVVDPEGSAGAGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDVAAQRFRGKDAVTNFKPLAVSDGGDCGGDDDDAEAEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGLVGRKRAAGENLSGSAQGACVRKAREPLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSVGVAGGVAGNVSAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKCLKAGDSVCFHRSTGPDRQLFIDFKVRRTNANETAVLFGSVGPVVEPVQMVRLFGVNILKLPGSDANANNNNNHNAAAPMAGCCNGKRKEMELFTFECIKKPKIIGAL* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1394 396 Gene3D AP2/ERF domain 66 123 IPR036955 GO:0003700|GO:0006355
Lja2g1394 396 MobiDBLite consensus disorder prediction 1 74 - -
Lja2g1394 396 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 396 IPR044800 GO:0003700
Lja2g1394 396 SUPERFAMILY DNA-binding pseudobarrel domain 199 308 IPR015300 -
Lja2g1394 396 Gene3D - 191 325 IPR015300 -
Lja2g1394 396 CDD B3_DNA 200 301 IPR003340 GO:0003677
Lja2g1394 396 Pfam AP2 domain 66 114 IPR001471 GO:0003700|GO:0006355
Lja2g1394 396 SMART B3_2 202 318 IPR003340 GO:0003677
Lja2g1394 396 MobiDBLite consensus disorder prediction 1 24 - -
Lja2g1394 396 ProSiteProfiles B3 DNA-binding domain profile. 202 318 IPR003340 GO:0003677
Lja2g1394 396 Pfam B3 DNA binding domain 202 310 IPR003340 GO:0003677
Lja2g1394 396 ProSiteProfiles AP2/ERF domain profile. 67 122 IPR001471 GO:0003700|GO:0006355
Lja2g1394 396 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 396 - -
Lja2g1394 396 SUPERFAMILY DNA-binding domain 66 122 IPR016177 GO:0003677
Lja2g1394 396 CDD AP2 66 121 IPR001471 GO:0003700|GO:0006355
Lja2g1394 396 SMART rav1_2 67 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1394 Lja-Chr2 13385617 13387292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1394 6 396 B3 DNA Binding Superfamily AT1G25560 57.463 9.97e-139 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Lja2g1394 B3 4.6e-27 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1394 2 13385617 13387292 Lja2g1394 2 13385617 13387292 ECH