Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1390 ATGGCCACTGTTGCAACAAGAGGATTTGGAGTGGGAGTGACAAACCCCCAAACCCACCACAAACCCAAGCACAAGTCCTTGTTCTTAGGCCAAGGACTTAGAATTAGACCCTCAATTGAAGTACCATGTGGTGGAAGATTCAGTGTCTCAAACCCAAAAGGGTTTGGTGTTTTTGCTCTTGGGGGTGAATGGGTTGAATCAATTCACAACCTCTTTGTGGGTGTTGGGGTTGGGCTTCCTTGCACTGTCATGGAGTGTGGTGACATGATCTATAGGAGCACTCTTCCTAAGTCTAATGGATTGACACTTACTGCCCCTGGTGTAATTCTGGCTTTGGGTGCTGTCTCTTATCTCTGGGCTACTCCTGGTGTGGCTCCTGGTTTCTTTGACATGTTTGTGCTTGCTTTTGTTGAAAGGTTGTTCAGACCCACTTACAAAAAGGATGATTTTGTTCTTGGGAAGAAGTTAGGGGAGGGATCTTTTGGAGTGGTTTATAGAGTGTCACTGGCCAAGCCCTCTTCAAAGGAAGGTGACTTAGTCTTGAAGAAGGCAACTGAATATGGTGCAGTAGAAATTTGGATGAATGAGCGAGTACGAAGAGCTTGTGCAAACAGCTGTGCAGATTTTGTTTATGGCTTTTATGAGAGCTCTTCTAAGAAGGCTGCTGAATACTGGCTCATATGGCGGTTTGAAGGGGATTCCACCTTAGCTGATCTGATACAGAGTAGAGACTTTCCATATAATGTCGAAACATTGATTTTGGGTGAGGTCCAAGACTTGCCAAAGGGATTGGAAAGAGAAAATAGAATTATTCAAACAATTGTGAGGCAGCTCTTATTTGCACTGGATGGTCTTCACTCAACTGGTATTGTGCATAGGGATATTAAGCCACAAAACATTATTTTCTCTGAAGGGTCTCGTACATTCAAAATCATTGATCTTGGAGCTGCTACTGACCTGCGAGTTGGCATCAACTATATTCCTAAAGAGTTTCTTTTGGATCCAAGATATGCTGCACCAGAACAGTACATCATGAGCACGCAAACTCCATCTGCACCTTCAGCTCCAGTTGCAACTGCACTGTCCCCAGTCTTATGGCAGCTGAATTTGCCTGACAGATTTGATATCTATAGTACTGGTCTAATCTTTCTTCAAATGGCATTTCCTGGTTTACGCAGTGATAATAGTCTCATACAATTCAAACGTCAATTAAAAAGGTGTGACTATGACCTGATCGCCTGGAGAAAAAGTGTTGAGCCTCGATGTGGAGCTGACCTCAGGAGGGGCTTCGAGCTGTTGGATTTAGATGGTGGAATAGGATGGGAACTTCTGACATCAATGGTCCGATACAAGGCAAGGCGAAGGCTGAGCGCAAAAGCAGCACTAGCTCATCCTTACTTTGACAGAGAAGGCTTGTTGGCACTATCCTTCATGCAAAATGCGAGGCTGCAGCTCTTACGAGCTACTCAGCAGGATTATGGAGAAGCTGCCGAGTGGATTACTCAGCTAATGGCAAGATCAGGAACAGAGAAAGATGGTGGATTTACTGAAGCTCAGCTCCAGGAACTGAGAGAAATTCAACCCAAAAAGAAGGCTAGTCCACAGAGAAATGCTCTAGCTTCAGCTCTTAAACTTCAGAGGAAATTTCTAAAAACCGTAAATGAGAGTGTGGATGAGCTCAGCAGACGCAGGAAAAGCCTTTGGTGGAGCAGATGGATCCCAAGAGAGGAATGA 1734 0.4464 MATVATRGFGVGVTNPQTHHKPKHKSLFLGQGLRIRPSIEVPCGGRFSVSNPKGFGVFALGGEWVESIHNLFVGVGVGLPCTVMECGDMIYRSTLPKSNGLTLTAPGVILALGAVSYLWATPGVAPGFFDMFVLAFVERLFRPTYKKDDFVLGKKLGEGSFGVVYRVSLAKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFYESSSKKAAEYWLIWRFEGDSTLADLIQSRDFPYNVETLILGEVQDLPKGLERENRIIQTIVRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAATDLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSTGLIFLQMAFPGLRSDNSLIQFKRQLKRCDYDLIAWRKSVEPRCGADLRRGFELLDLDGGIGWELLTSMVRYKARRRLSAKAALAHPYFDREGLLALSFMQNARLQLLRATQQDYGEAAEWITQLMARSGTEKDGGFTEAQLQELREIQPKKKASPQRNALASALKLQRKFLKTVNESVDELSRRRKSLWWSRWIPREE* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1390 577 Gene3D Transferase(Phosphotransferase) domain 1 258 471 - -
Lja2g1390 577 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 16 577 IPR044803 GO:0004674|GO:0009579
Lja2g1390 577 PANTHER SERINE/THREONINE-PROTEIN KINASE STN7, CHLOROPLASTIC 16 577 - -
Lja2g1390 577 SUPERFAMILY Protein kinase-like (PK-like) 135 469 IPR011009 -
Lja2g1390 577 MobiDBLite consensus disorder prediction 1 23 - -
Lja2g1390 577 CDD STKc_SNT7_plant 154 467 - -
Lja2g1390 577 ProSiteProfiles Protein kinase domain profile. 150 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1390 577 ProSitePatterns Protein kinases ATP-binding region signature. 156 182 IPR017441 GO:0005524
Lja2g1390 577 Gene3D Phosphorylase Kinase; domain 1 136 229 - -
Lja2g1390 577 SMART serkin_6 150 467 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1390 577 Pfam Protein kinase domain 151 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1390 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 290 302 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1390 Lja-Chr2 13304020 13308633 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1390 267 468 Core Cell Cycle Gene Families AT2G38620 31.455 1.21e-16 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Lja2g1390 Pkinase 4e-19 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1390 2 13304020 13308633 Lja2g1390 2 13304020 13308633 ECH