Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1389 ATGGCTGGACCATCATGGTTGGTGGACAAAAGTAGAATTGCAACCAAAATAAAAAGTGCATCAGGAGGGTGTGATCCTGAACAAATTGCATGGAAAAGCAATCCTTCCAAGACTTGCCCAAATTGTCAACATGCTATCGACAACAATGATGTAGCACACGAGTGGCCTGGCTTACCAAAGGGTGTCAAATTTGATCCATCTGATCAGGAGATAATTTGGCACTTGCTTGCAAAAGTTGGTTCAGGAAATTCAAGACCTCATCCTTTCATTGATGAATTTATTGCTACACTTGAAGTGGATGATGGAATTTGCTATACTCATCCGCAAAATTTACCTGGTGTTAAGCAAGACGGAAATGCTTCCCACTTCTTCCATAGAGCAATTAAGGCTTATAATACTGGCACTCGAAAGCGCCGAAAAATTCATGGTCAGGACTTCGGTGATGTCCGTTGGCACAAGACTGGAAAGACCAAACCAGTAATCTTGAATGGGGTTCAGAAAGGCTGTAAAAAGATTATGGTTCTGTATATGAACACTGTAAGAGGAGGAAAACCTGAGAAAACTAATTGGGTCATGCATCAATATCACTTAGGAACTGAAGAGGATGAAAAGGATGGGGAGTTTGTTATCTCAAAAGTGTTTTACCAGCAGACGCTAGTCAAGCTGGGTGATAAAGATCACCAGAATGTTACTGAGGCCATTGAAACCACTGAAGCAACAATTGTGAAAGCGGATCCAGTCACTCCCAAATCTGTAAGTCCTGAGCCTCTTTGTACTGAAAGGGAGTATTCAGATTTCGACGTAGGACCAGAAATGCATACCATTCCTCAGCTTCCTCAGATGGACCGTTTGGATGAAATTCGAGCTGATTGTGAAGATCTTTTAAAAGCTGATCTATTGATGGTAGAAAATCAACTTAATGAAGACATGGATAATCAAGAAAACAATGCTGATGAAGAGAATATGGATAATAAAGAGAACAATGCTGATGAAGGCCAAAAATGGTGGGATTGTGGGTCGCAGAATCTGTTGGATTCACAACAACTGGATAACAAAGAAAACAATGCTGATGAAGGCCAAAAATGGTGGGATAGCGAGTCACAGAATCTGCTGGATTCGCAACAACTGGTCGAAGCGTTGTCCCTGTGTGATGATCTACTTCATAGCCAGTCTCCCGGCAGAGATGGTAAACGTGGAGAACATAAGGATCAACTTGGTCTTTCTGTTTATGCTCAGCTAGGACCAGAGCATCTGAAAAAGGACATTGAAGAGTGCCAAAAACTTGTCCTCGACCCTGCAAATATAGAGCATGATACGCCGCCTTCCGAGTTTCGGCTAAGTCAACTGGAATTTGGCTCACAGGATAGCTTTACTTCTTGGGGTTACGGCAAGACTGTGAACTGA 1404 0.4238 MAGPSWLVDKSRIATKIKSASGGCDPEQIAWKSNPSKTCPNCQHAIDNNDVAHEWPGLPKGVKFDPSDQEIIWHLLAKVGSGNSRPHPFIDEFIATLEVDDGICYTHPQNLPGVKQDGNASHFFHRAIKAYNTGTRKRRKIHGQDFGDVRWHKTGKTKPVILNGVQKGCKKIMVLYMNTVRGGKPEKTNWVMHQYHLGTEEDEKDGEFVISKVFYQQTLVKLGDKDHQNVTEAIETTEATIVKADPVTPKSVSPEPLCTEREYSDFDVGPEMHTIPQLPQMDRLDEIRADCEDLLKADLLMVENQLNEDMDNQENNADEENMDNKENNADEGQKWWDCGSQNLLDSQQLDNKENNADEGQKWWDSESQNLLDSQQLVEALSLCDDLLHSQSPGRDGKRGEHKDQLGLSVYAQLGPEHLKKDIEECQKLVLDPANIEHDTPPSEFRLSQLEFGSQDSFTSWGYGKTVN* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1389 467 MobiDBLite consensus disorder prediction 318 332 - -
Lja2g1389 467 SUPERFAMILY NAC domain 43 216 IPR036093 GO:0003677|GO:0006355
Lja2g1389 467 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 352 461 IPR044799 GO:0003700
Lja2g1389 467 Gene3D NAC domain 67 219 IPR036093 GO:0003677|GO:0006355
Lja2g1389 467 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 350 IPR044799 GO:0003700
Lja2g1389 467 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Lja2g1389 467 Coils Coil 296 330 - -
Lja2g1389 467 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 352 461 - -
Lja2g1389 467 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 350 - -
Lja2g1389 467 MobiDBLite consensus disorder prediction 313 337 - -
Lja2g1389 467 ProSiteProfiles NAC domain profile. 58 216 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1389 Lja-Chr2 13280612 13287811 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1389 5 216 NAC Transcription Factor Family AT4G28500 53.670 5.46e-76 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja2g1389 NAM 1.5e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1389 2 13280612 13287811 Lja2g1389 2 13280612 13287811 ECH