Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1387 ATGAAAAAGGAAGAAGATCAAGGGCAGTGTTCTTCTCAAGCAATCAACAATAACATTCAAAGCTATCATCAAGAGCAGCTACTCTTTCAGCAACAGATGCAGCAACAGCAAAACTTTGATAACATCTTTGGAGGTGGAAGAGGTTTAAATATGTTCCCAGAAGTTCCATGGTCCATGAACCCGGTTCATTCTTTCAACCCGGTTCGGGACCATGAACCTTCATCATTTATTGTCCCTCCACCACCTTCACCTTATGCTGGTTTCTTCAACAGAAGGGTTCCATCCCTTCAGTTTGCATATGAGGGTCCCTCTTCTGACCATCATCTAAGGATCATATCTGATGCACTGGTTGGACCCATGGTTCAAACCGGTTCAGTTCCCTACGGGCTCCAAGCTGAGCTGGGGAAGATGACTGCTCAGGAAATCATGGAGGCTAAGGCTCTTGCAGCTTCCAAGAGCCACAGTGAGGCTGAAAGGAGGCGCAGAGAGAGAATCAACAACCATCTTGCTAAGTTGAGAAGCTTGTTGCCAAACACAACCAAAACAGATAAGGCTTCGTTGTTAGCAGAAGTGATCCAACATGTAAAGGAGCTGAAGCGACAAACTTCATTAATAGCAGAAACAAGTCCAGTGCCAACAGAAGCTGATGAGCTAACAGTGGATGCAGCTGATGAGGATGGAAGGTTTGTGATAAAAGCCTCACTGTGCTGTGAAGACAGGTCAGATCTCCTACCAGACCTCATCAAGGCACTGAAAGCATTGAGGCTAAGAACCCTCAGAGCCGAGATCTCAACGCTCGGCGGGCGTGTGAAAAACGTGCTCTTCATCACCGGGGATGATCAGGATTCAAGTGGTGAAGATCAAAGCCAACAACAGTATTGTATTAGCTCGATACAAGAAGCACTTAAGGCGGTGATGGAGAAGAATGGTGGTGGTGGGGATGAATCAGCTTCTGGGAATGTTAAGCGCCAAAGGACTAACATCAATATCATTGAACAAAGGTCTTTATGA 1011 0.4599 MKKEEDQGQCSSQAINNNIQSYHQEQLLFQQQMQQQQNFDNIFGGGRGLNMFPEVPWSMNPVHSFNPVRDHEPSSFIVPPPPSPYAGFFNRRVPSLQFAYEGPSSDHHLRIISDALVGPMVQTGSVPYGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEADELTVDAADEDGRFVIKASLCCEDRSDLLPDLIKALKALRLRTLRAEISTLGGRVKNVLFITGDDQDSSGEDQSQQQYCISSIQEALKAVMEKNGGGGDESASGNVKRQRTNINIIEQRSL* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1387 336 Pfam Helix-loop-helix DNA-binding domain 152 198 IPR011598 GO:0046983
Lja2g1387 336 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 205 IPR036638 GO:0046983
Lja2g1387 336 PANTHER TRANSCRIPTION FACTOR BHLH30 65 332 IPR045847 GO:0003700|GO:0006355
Lja2g1387 336 Gene3D - 144 205 IPR036638 GO:0046983
Lja2g1387 336 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
Lja2g1387 336 SMART finulus 155 204 IPR011598 GO:0046983
Lja2g1387 336 CDD bHLH_AtAIG1_like 144 222 - -
Lja2g1387 336 PANTHER TRANSCRIPTION FACTOR BHLH30 65 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1387 Lja-Chr2 13260125 13263291 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1387 11 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 55.405 6.42e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja2g1387 HLH 2.3e-12 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1387 2 13260125 13263291 Lja2g1387 2 13260125 13263291 ECH