Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1377 ATGTCGTCGTCGCAAGAGAGCGCTTCTCGTTCAAGCTCCGCCGCGGCTGATTCCTACATTGGTTGCTTGATCAGCTTGACCTCCAAGAGTGAGATCAGATACGAGGGGATTCTCTACAACATCAACACCGATGAATCCAGTATTGGCCTCCGCAACGTGCGATCTTTTGGAACAGAAGGAAGGAAAATGGATGGTCAACAAATTCCCCCAAGCGACAAGGTTTATGAGTATATACTTTTCCGTGGATCTGACATCAAGGATTTACAGGTTAAATCTTCTCCACCTGTCCAGCCTACTCCACAAGTCAATATTGACCCAGCTATCATTCAGTCTCACTATCCTCGCCCAGCGACCACATCTACAAGTTTGCCTTCTGCTGTAAGTGGGTCTTTGACTGATCTCAGTTCCCATCATACTGCACAGCTTGGACTTCCTGGGTCAAATTTTCAAGGACCCTTGCCTTTGTATCAACCTGGAGGGAACATAGGATCATGGGGAGCTTCTCCAGCTCCAAATGCAAGTGGTGGTGGGCTTCCTATGCCGGTGTATTGGCAAGGATATTATGGTGCCCCGGGTGGTCTTCCTCATTTACACCAGCAACCTTTGCTTCGACCACCACCTGGTTTAGCAATGCATTCATCTATTCAGCAGCCTATGCAGTACCCCAATTTTAGTCTCTCTTCACCGGCTGTATCTTCTAATTTGCCGGAATTGCCATCTTCTTTGCTACCTGCGAGTACAAGCACAACCAGTGTAACATCTGCTTCTTTACCTCTGTTAAATTTTCCTCCTGCACCTTCTGCATTGCCTCCTGCACCTGCGGCATTGTCTCCTGCACCTTCTGCATTGCCTCGCGCACCTTCTGCATTGCCTCCTGCACCTTCTGCTACCCTAGCTTCAGAAATTTTGCCAGTTGCATTAGCCAACAAGGCAACAAATGTTTCAACTTCAGCAGTTTCGCTAGCTTCTAACTTTCCATCACTGACCCCATTGACCAATTCTGGTCCAGATGTAAATGCTATAGTGCCACCGGTCTCCAGCAAACCTAATGCAATTTCAGGCTCAGGTTTGCTATATCAAACTGTATCACAGTTCTCTCCTGCTTTAATGCCCCCGGTCTCCAGCAAACCTAATGTGATTTCTGGTTCAAGCTTGCCATACCAAACTGTATCACAGTTCTCTTCTGCTTTAACACCACCAGTCTCCAGCAAACCTAATGCAATTTCAGGTTCAGGTTTGCCAAATCAAACTGTGTCACAGTTCTCTCCTGCAGTTGTTGGATCATCTCATTCTATCCATACAGACACACCAGCCCCTGCTCTGGTAACCCCAGGTCAATTATTGCAGCCTGGACCAACTAAAGTTTCGTATGCTCAGCCTTCACAGGCACCTAATAAGGATGTTGAAGTGGTTCAAGTGTCTTCAACATCATCTGCTGAGCCATCTCGGCCAGTTTCTGCTGAAACTCAGCCACCGATACTGCCATTGCCAGTAAATTCAAGGCCCAATTTCCGGGCTGGTGGAGCTCCAATCCAAACTCATTATGGCGGCTACAACTATAGAGGACGAGGAAGAGGAAGAGGAACTGCGGGCTTTCGTCCAGTCACAAAATTCACTGAAGATTTTGATTTCACGGCAATGAATGAGAAATTCAAAAAGGATGAAGTATGGGGCCATCTTGGTAAAAGCAATAAGTCTCATTCAAAAGATAAAGATGGGGAAGAAAATGCTTTTGATGAAGATTACAATGAAGAAGAAGACAATGATGACTCATCAAATGCTGAGGTTAAGCCTGTTTATAACAAGGATGATTTCTTTGATTCGCTCTCGAGCAATGTGAGTGATAATGCTTCACAGAACGGAAGGACTAGATACTCTGAACAGATTAAGATTGATACTGAGACATTTGGTGATTCTGCGAGGTACCGTGGTGGTGGTCGAGGGGGCCGTGGTGGGCCTTTCCGTGGTGGACGTACTCGAGGTGGTTTTTATGGAAGAGGAGGAGGGTTTGGCTATTATGGAAGAGGAAGGGGCCGTGGGCCTTTCCGTGCTGGTTAG 2058 0.4679 MSSSQESASRSSSAAADSYIGCLISLTSKSEIRYEGILYNINTDESSIGLRNVRSFGTEGRKMDGQQIPPSDKVYEYILFRGSDIKDLQVKSSPPVQPTPQVNIDPAIIQSHYPRPATTSTSLPSAVSGSLTDLSSHHTAQLGLPGSNFQGPLPLYQPGGNIGSWGASPAPNASGGGLPMPVYWQGYYGAPGGLPHLHQQPLLRPPPGLAMHSSIQQPMQYPNFSLSSPAVSSNLPELPSSLLPASTSTTSVTSASLPLLNFPPAPSALPPAPAALSPAPSALPRAPSALPPAPSATLASEILPVALANKATNVSTSAVSLASNFPSLTPLTNSGPDVNAIVPPVSSKPNAISGSGLLYQTVSQFSPALMPPVSSKPNVISGSSLPYQTVSQFSSALTPPVSSKPNAISGSGLPNQTVSQFSPAVVGSSHSIHTDTPAPALVTPGQLLQPGPTKVSYAQPSQAPNKDVEVVQVSSTSSAEPSRPVSAETQPPILPLPVNSRPNFRAGGAPIQTHYGGYNYRGRGRGRGTAGFRPVTKFTEDFDFTAMNEKFKKDEVWGHLGKSNKSHSKDKDGEENAFDEDYNEEEDNDDSSNAEVKPVYNKDDFFDSLSSNVSDNASQNGRTRYSEQIKIDTETFGDSARYRGGGRGGRGGPFRGGRTRGGFYGRGGGFGYYGRGRGRGPFRAG* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1377 685 SMART FDF_2 536 640 IPR019050 -
Lja2g1377 685 MobiDBLite consensus disorder prediction 560 685 - -
Lja2g1377 685 PANTHER LSM DOMAIN, FDF DOMAIN, FFD BOX, DFDF DOMAIN, TFG BOX-RELATED 8 260 - -
Lja2g1377 685 ProSiteProfiles DFDF domain profile. 530 566 IPR025762 -
Lja2g1377 685 MobiDBLite consensus disorder prediction 114 146 - -
Lja2g1377 685 CDD LSm14_N 19 90 IPR025609 -
Lja2g1377 685 ProSiteProfiles FFD box profile. 598 613 IPR025761 -
Lja2g1377 685 Pfam Scd6-like Sm domain 19 92 IPR025609 -
Lja2g1377 685 MobiDBLite consensus disorder prediction 560 576 - -
Lja2g1377 685 MobiDBLite consensus disorder prediction 577 591 - -
Lja2g1377 685 PANTHER SCD6 PROTEIN-RELATED 335 679 - -
Lja2g1377 685 PANTHER LSM DOMAIN, FDF DOMAIN, FFD BOX, DFDF DOMAIN, TFG BOX-RELATED 335 679 - -
Lja2g1377 685 PANTHER SCD6 PROTEIN-RELATED 8 260 - -
Lja2g1377 685 MobiDBLite consensus disorder prediction 422 436 - -
Lja2g1377 685 MobiDBLite consensus disorder prediction 605 626 - -
Lja2g1377 685 Pfam FDF domain 537 638 IPR019050 -
Lja2g1377 685 ProSiteProfiles TFG box profile. 620 640 IPR025768 -
Lja2g1377 685 MobiDBLite consensus disorder prediction 422 501 - -
Lja2g1377 685 MobiDBLite consensus disorder prediction 449 485 - -
Lja2g1377 685 Gene3D - 10 95 - -
Lja2g1377 685 SMART LSM14_2 13 113 IPR025609 -
Lja2g1377 685 SUPERFAMILY Sm-like ribonucleoproteins 18 95 IPR010920 -
Lja2g1377 685 MobiDBLite consensus disorder prediction 396 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1377 Lja-Chr2 13183639 13189399 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1377 2 13183639 13189399 Lja2g1377 2 13183639 13189399 ECH