Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1353 ATGTCCGCGGCGTCGCCGTCTCCGGCGTCTTCCACCGCCGCGCCACCGTCACGGACACTGTCCCCTGCCGCCACTCTGCCACCGCAACAACTTTCTTCACCTCCGGTCACCTCATCAGCTCCACCTCCGGCTAATGTGTCAGCTCCTCCTCCGGCAACAACCCTACCAGCTCCACCTCCGGCAACCCCATCAGCTCCTCCTCCGGCAACCCCATCAGCTCCTCCTCCCGCAGTTCCATCGCCTCCTCCGGCTTCACCTCCATTGTCGCCTCCAGTAGCTTCCCCTCCAGCAACACCATCAAACCCTCCTCCGGCGCAACAACCGCCACCGCCACCACCTTCTACGGGACGTCCATCACCTCCACCGCAATCACAGGTTCCTCCAAGAAGCTCTCCGCCGCCAGTATTAGCTCCACCTCCGTCTAATCCGCCAGAGAAATCACCCCCTCCTCCGGCTTCTGTGCCACCACCTAGAGGTTCATCTCCACCGCCGCCGCCACCGTCTGCACCACCCCCAAGAAACGCAACTCCACCACAAGCACCGGCACCGCGGGTGGCTGTGCCGCCGCCCAGGTCATCACCGCCACCATCATCATCATCCTCACCACCACCAGCAGCATCCCCTCCTGATCCTAGAATTAGTCCTCCTCCTGTCACACCAAGTTCTCAACCGGTTCCACCTTCAAATTCTACACCAAGATCACCTCCAATTGTTCAATTGGCGCCTCCTCCATCGCGCTTCCTGCTTTCACCACCGCCGCCATCGCAGAACCGGTCAGAAAACTCAAGCCCTGAGGATGGAGACAGTGGTGGAATTGGTACTGGTGCTGTAGTGGCTCTTGTTGTGCTGGGTGGAATTTTGGGGTTTATCTTGATTGGAGTTGCTATATGGTGCTTCAGGAGGCAAAAGAAGAAGGAGCCTGATAATAATGGTTATGTCATGCCATTCACTCAACCTTCCTCAACTGGATCAGATTCATCCTTTTTCAAGACACCATCCTCAGCTCCTATAAGAAGTGGATCTGGCAGTGATGTTTTGCATTCACCATCTGACCCTGGTGGACTTGGCAACTCAAGATCATGGTTTTCATATGAAGAACTGGTCAAGGCCACAAATGGTTTCTCAGCTCAAAATCTTTTGGGCGAGGGCGGATTTGGTTCTGTATATAAAGGATCCCTACCTGATGGGAGAGAGATAGCAGTCAAACAGCTGAAAATTGGTGGAGGTCAGGGAGAGAAAGAATTCAAAGCTGAGGTTGAAATTATTAGTCGCATACATCATCGCCATTTGGTTTCTCTGGTGGGATTCTGCATTCAAGATACCAGAAGACTACTTGTCTATGACTATGTCTCTAACGATACCCTTTATTTTCATCTACATGGGCCGGGTCAGCCTGTGCTAGACTGGGAAAAACGTGTTAGAATCGCCGCTGGTGCAGCTCGAGGAATAGCTTATCTCCATGAAGACTGCAATCCTCGGATTATTCACAGAGATATCAAGTCATCAAACATTCTTTTGGATAACAACTATGAAGCCAAAGTCTCAGATTTCGGGCTAGCCAAATTAGCTCTTGATGCATATACACATATAACGACGCGTGTCATGGGAACTTTTGGGTATGTTGCACCTGAATATGCTTCAAGTGGAAAATTGACTGAGAAGTCTGATGTATATGCTTATGGAGTTGTGCTTTTGGAGCTAATTTCCGGACGTAAGGCAGTAGATTCATCCCAACCCTTGGGAGATGAGAGTCTAGTTGAATGGGCTCGACCTTTGCTGAGTCACGCAATCGAAAGTGAAGAGTTTCAGAGTTTGGTAGATTCAAGGCTAGGAAATAACTACGTTGAAAGTGAAATGTTTTGCATGATTGAAGTTGCTGCTGCGTGTGTGCGGCATTCGGCTTCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGTTTAGCAACTTCAGATATAACGAACGGAATGCGACTCGGGGAAAGCCAGGCGTTTGACTCTGCACAGCAATCTGAAGAAATAAGACTGTTTAGGAGGATGGCATTTGGCAGCCAAAATTACAGCACAGACTTCTTCAGTCAGGCTAGTTTGAATACGTCGTGA 2109 0.5055 MSAASPSPASSTAAPPSRTLSPAATLPPQQLSSPPVTSSAPPPANVSAPPPATTLPAPPPATPSAPPPATPSAPPPAVPSPPPASPPLSPPVASPPATPSNPPPAQQPPPPPPSTGRPSPPPQSQVPPRSSPPPVLAPPPSNPPEKSPPPPASVPPPRGSSPPPPPPSAPPPRNATPPQAPAPRVAVPPPRSSPPPSSSSSPPPAASPPDPRISPPPVTPSSQPVPPSNSTPRSPPIVQLAPPPSRFLLSPPPPSQNRSENSSPEDGDSGGIGTGAVVALVVLGGILGFILIGVAIWCFRRQKKKEPDNNGYVMPFTQPSSTGSDSSFFKTPSSAPIRSGSGSDVLHSPSDPGGLGNSRSWFSYEELVKATNGFSAQNLLGEGGFGSVYKGSLPDGREIAVKQLKIGGGQGEKEFKAEVEIISRIHHRHLVSLVGFCIQDTRRLLVYDYVSNDTLYFHLHGPGQPVLDWEKRVRIAAGAARGIAYLHEDCNPRIIHRDIKSSNILLDNNYEAKVSDFGLAKLALDAYTHITTRVMGTFGYVAPEYASSGKLTEKSDVYAYGVVLLELISGRKAVDSSQPLGDESLVEWARPLLSHAIESEEFQSLVDSRLGNNYVESEMFCMIEVAAACVRHSASKRPRMGQVVRAFDSLATSDITNGMRLGESQAFDSAQQSEEIRLFRRMAFGSQNYSTDFFSQASLNTS* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1353 702 PANTHER BNACNNG34790D PROTEIN 76 698 - -
Lja2g1353 702 MobiDBLite consensus disorder prediction 308 352 - -
Lja2g1353 702 Gene3D Transferase(Phosphotransferase) domain 1 450 667 - -
Lja2g1353 702 CDD STKc_IRAK 380 650 - -
Lja2g1353 702 MobiDBLite consensus disorder prediction 313 346 - -
Lja2g1353 702 ProSitePatterns Serine/Threonine protein kinases active-site signature. 494 506 IPR008271 GO:0004672|GO:0006468
Lja2g1353 702 SUPERFAMILY Protein kinase-like (PK-like) 355 645 IPR011009 -
Lja2g1353 702 MobiDBLite consensus disorder prediction 1 33 - -
Lja2g1353 702 ProSitePatterns Protein kinases ATP-binding region signature. 380 402 IPR017441 GO:0005524
Lja2g1353 702 MobiDBLite consensus disorder prediction 34 251 - -
Lja2g1353 702 MobiDBLite consensus disorder prediction 252 268 - -
Lja2g1353 702 PRINTS Proline rich extensin signature 28 44 - -
Lja2g1353 702 PRINTS Proline rich extensin signature 55 72 - -
Lja2g1353 702 PRINTS Proline rich extensin signature 4 25 - -
Lja2g1353 702 PRINTS Proline rich extensin signature 75 100 - -
Lja2g1353 702 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 76 698 - -
Lja2g1353 702 Gene3D Phosphorylase Kinase; domain 1 353 449 - -
Lja2g1353 702 Pfam Protein tyrosine and serine/threonine kinase 377 646 IPR001245 GO:0004672|GO:0006468
Lja2g1353 702 ProSiteProfiles Protein kinase domain profile. 374 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja2g1353 702 MobiDBLite consensus disorder prediction 1 270 - -
Lja2g1353 702 SMART serkin_6 374 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1353 Lja-Chr2 12944043 12949469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1353 249 643 Trihelix Transcription Factor Family AT1G68690 68.500 0.0 566
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lja2g1353 PK_Tyr_Ser-Thr 5.1e-44 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1353 2 12944043 12949469 Lja2g1353 2 12944043 12949469 ECH