Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1350 ATGCTCATGAAGTACTTAACTCTACTCTATACTCATCTCAAATGGGTGTTTGATTTTCTTCTATATTATCCCTTCTACACCCTCCATGGTTCTCAATTCCCAATAATTGGAGAGGAACAAGAACAGGGTATGTGTCAGTTTTATGAACCCAACCTAATTGGTTCAGAGGAAGAAGAGATTGATTGTGCTGTGTGCCTCAGCAAAATTGAAGGAGGAGAGGAGATTAGAGTGCTGAGATGTGACCATTTCTTTCACAGAGATTGCTTGGATACATGGTTTGGTTTCAAGAACCCCACTTGCCCTCTTTGCAGAGGATCAATGGGTCCAAGAAGGGCCATCAATGAGGTTGGAGCTCAAGTTCTCTTGTTTGAGTTTTGTGCCACCCGCACTCATGATGATCGTGATACATGGTGGCTACGCTAA 423 0.4303 MLMKYLTLLYTHLKWVFDFLLYYPFYTLHGSQFPIIGEEQEQGMCQFYEPNLIGSEEEEIDCAVCLSKIEGGEEIRVLRCDHFFHRDCLDTWFGFKNPTCPLCRGSMGPRRAINEVGAQVLLFEFCATRTHDDRDTWWLR* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1350 140 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 3 132 - -
Lja2g1350 140 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 132 - -
Lja2g1350 140 Pfam Ring finger domain 61 104 IPR001841 -
Lja2g1350 140 ProSiteProfiles Zinc finger RING-type profile. 62 104 IPR001841 -
Lja2g1350 140 SMART ringv_2 61 104 IPR011016 GO:0008270
Lja2g1350 140 SUPERFAMILY RING/U-box 56 113 - -
Lja2g1350 140 SMART ring_2 62 103 IPR001841 -
Lja2g1350 140 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 111 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1350 Lja-Chr2 12921528 12922142 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1350 61 120 C3H Transcription Factor Family AT1G15100 45.000 1.27e-13 62.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1350 2 12921528 12922142 Lja2g1350 2 12921528 12922142 ECH