Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1279 ATGGGAAGGGGTAGGGTTGAACTGAAGAGGATAGAGAACGTGATCAATCGGCAGGTGACTTTCTCCAAAAGGAGAGGTGGGTTGCTTAAGAAAGCTCATGAGATCTCTGTGCTATGTGATGCTGAGGTTGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAGTATGCTACTGATTCATGCATGGAGAAGATTCTGGAACGCCATGAAAGGTACAACTATGCAGAGAGACAGCTAGCAGGAAATGCAGATAATTCTGATGAACAGGTAAATTGGACTATAGAATATACTAGACTCAAGTCAAAGATTGACCTCTTGCAGAGAAACCACAGGCACTATGTTGGAGAGGATTTGGATACAATGAGTCTCAAAGAGCTTCAATGCCTGGAGCAGCAGTTAGATACTGCTCTCAAGAACATCCGTACACGCAGAAATCAAGTGATGTACGATTCTATTTCTGACCTTCAGAAAAAGGAGAAAGTGATTAAAGAGCAGAACAACATGCTTGCAAAGAAGATCAAGGAGAAAGAGAAAGAGAAAGCTGTAGCACAGGAGGCTCCTCAATTGGAGCAGCCAAATTACAGGGTTGATACATCCTTCTTACTGCACCAAGAACCCCTTCCCACTTTGAACATGGGTGGCAATTACCATCAGCAAGAAACACCAGAACTGGGGAGGAACGATCTTGACCTCACTCTGGAACCATTCTATTCTTGCCATCACCTTGGGTGCTTCTGA 741 0.4399 MGRGRVELKRIENVINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERHERYNYAERQLAGNADNSDEQVNWTIEYTRLKSKIDLLQRNHRHYVGEDLDTMSLKELQCLEQQLDTALKNIRTRRNQVMYDSISDLQKKEKVIKEQNNMLAKKIKEKEKEKAVAQEAPQLEQPNYRVDTSFLLHQEPLPTLNMGGNYHQQETPELGRNDLDLTLEPFYSCHHLGCF* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1279 246 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja2g1279 246 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Lja2g1279 246 Coils Coil 156 187 - -
Lja2g1279 246 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lja2g1279 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja2g1279 246 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Lja2g1279 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja2g1279 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja2g1279 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja2g1279 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja2g1279 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 222 - -
Lja2g1279 246 Coils Coil 124 147 - -
Lja2g1279 246 Pfam K-box region 86 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja2g1279 246 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 222 - -
Lja2g1279 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja2g1279 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1279 Lja-Chr2 12214763 12219042 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja2g1279 K-box 1.6e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1279 2 12214763 12219042 Lja2g1279 2 12214763 12219042 ECH
Lja2g1279 2 12214763 12219042 Lja1g2729 1 32540999 32548040 ECH
Lja2g1279 2 12214763 12219042 Lja2g1508 2 14624737 14643619 ECH