Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1278 ATGGGTAGGGGAAAGGTGGAGCTGAAGAGGATTGAGAACAAGATAAACCGCCAAGTGACATTTGCAAAGAGAAGGAATGGGTTGCTCAAGAAGGCTTATGAGCTCTCTATTCTCTGTGATGCTGAGGTTGCCCTCATTATCTTCTCCAACCGTGGAAAACTCTATGAGTTCTGCAGCAGCTCCAGCATGCCCAAGACACTTGAACGGTACCAAAAATGCAGTTATGGAGCCTTGGAAGTAAACCACCAATCTGAAATGGAGACACAGAGGCGCTACCAAGAGTATCTGAAGCTGAAATCAAAAGTTGAGGGACTACAGAGAACACAGAGAAACCTCCTTGGGGAAGAATTGGAGCACTTGGATATTAAGGACCTTGAGCAGCTTGAACGTCAGCTGGACTCTTCTCTGAAGCAAATCAGGTCTAACAAGACACAACAAATGCTTGATCAACTCTCCGATTTGCAGAGAAAGGAGGAGATGCTACTCGAAACTAATAATATCCTGAGGAACAAGTTGGAGGAAATTGATGTAGCTATTCAAACAGCATGGGAAGGTAGAGAGCAAAATGCTCCCTACAGCTACCCTCCTCAATCAGAGGGATACTATGAGACACCACATTGCAATAGTACATTGAGAATTGGCTATGATCCTTCAGTGGTAAATAATGAAGCAGGAGGAGGTGAAGGAACCTCAGCCCAGACTACCAATCAATTCATGCATGGATGGGTTACCTGA 735 0.449 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSILCDAEVALIIFSNRGKLYEFCSSSSMPKTLERYQKCSYGALEVNHQSEMETQRRYQEYLKLKSKVEGLQRTQRNLLGEELEHLDIKDLEQLERQLDSSLKQIRSNKTQQMLDQLSDLQRKEEMLLETNNILRNKLEEIDVAIQTAWEGREQNAPYSYPPQSEGYYETPHCNSTLRIGYDPSVVNNEAGGGEGTSAQTTNQFMHGWVT* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1278 244 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Lja2g1278 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja2g1278 244 Coils Coil 151 174 - -
Lja2g1278 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lja2g1278 244 PANTHER MADS BOX PROTEIN 1 227 - -
Lja2g1278 244 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lja2g1278 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja2g1278 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja2g1278 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja2g1278 244 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Lja2g1278 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lja2g1278 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lja2g1278 244 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja2g1278 244 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 1 227 - -
Lja2g1278 244 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lja2g1278 244 Coils Coil 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1278 Lja-Chr2 12199062 12206083 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lja2g1278 K-box 2e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1278 2 12199062 12206083 Lja2g1278 2 12199062 12206083 ECH
Lja2g1278 2 12199062 12206083 Lja1g2730 1 32558823 32567401 ECH
Lja2g1278 2 12199062 12206083 Lja2g1509 2 14647424 14651485 ECH