Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1246 ATGGCCAAAAGAGTTCTCACCTTTCTTCCCCATAGACAATTCTCATCAATACCTGAAATTCCAAGCCTTTACTCCTTCCTTCAACCTTCTGTGTTTGCTCTCAACAGAAACAGGACACAACCCATTTGTGAAGAGCCCCAAAAGCTTCCAACTTCACCCCCAAAGTCCCTTTCCCTCACCCCTGACCAAGTCTCCACACTCCAAACCACTCTTCACAAGTCCCTCATCACCAGTGACACTGATGAAGCTTGGAAGTCCTTCAAGTCTCTTACCTCTCATCAAGCCTTCCCACCTAAACCCCTCACCAATTCTCTCATTACTCATCTTTCATCCCTTGGTGACATTCACAACCTCAAGAGGGCTTTTGCTTCTGCTGTTTTTCTCATGGAGAGGAATCCAATGGTGCTGGAGTCTGAAACAATACATGCCATGCTTGATTCCATGAAGGGTGCCAACACTGCTGCCCCTGCTTTTGCTCTTGTCAGGTGTATGTTCAAGAACAGGTATTTTGTGCCTTTTGCCATGTGGGGTAATGTGCTTGTTGAGATTATTAGGAAAAGTGGTAACCTTGCTGCTTTCTTGCCTGTTTTTGAAGAGAGCTGTAGGGTTGCTTTGGATGAGAAGTTGGAGTTCATGAAACCTGATGTTGCTGCTTGTAATGCAGCACTGGAAGGTTGCTGTTGTGAGCTTGAATCAGTGACTGATGCTGAGAGGGTTGTTGGAACAATGTCTAATCTTGGTGTTAGGCCGGATGAATTGACTTTTGGATTTCTTGGTTATTTATATGCAGTTAAGGGGTTACAGGAAAAGATAAATGAGTTAGAAGTTTTGATGGGTGAGTTTGGTTGCTCAAACAAAAAGGTTTTTTATTCTAATTTGATTAGTGGGTATGTTAAGTCTGGCAATTTAGCTTCTATGGAGTCAACGATTCTCAGGAGTCTGAGTGATGAAGACAGGAAAGATTGGAATTTTGGAGGAGAAACGTTCTGTGCAGTAGTTAAGGAATATCTTCGGAAGGGAAATATCAAGGGTTTAGCTAATCTGATCAACGAAGCTCAGAAGTTAGAACCTTCTAACATTAAAGCTGATAACTCTATAGGTTATGGTATTGTTAATGCTTGTGTTAGTATGGGATTATCAGACAAAGCTCACAGCATTCTTGATGAAATGAATGCTCTGGGAGGCTCAGTAGGTCTTGGGGTCTATATACCTATCTTGAAGGCTTACTGCAAAGAAAATCGAACTGCTGAGGCTACTATATTGGTGATGGAGATTAGTAGTTCAGGTCTTCAGTTGGATGTGGAAACCTATGATGCTCTCATAGAAACATCCATGTCCAGCCAAGATTTTCAGTCAGCGTTTTCCCTGTTTAGGGACATGAGGGAGGCAAGGGTTCCTGACTTGAAAGGGAGTTACTTGACTATAATGACGGGTTTGATGGAGAATCATCGACCTGAGTTGATGGCAGCTTTCTTAGATGAGGTGGTTGGGGATCCTCGTATTGAAGTCGGTACTCATGATTGGAATTCTATCATTCATGCTTTCTGTAAAGCCGGGAGACTAGAAGATGCTAGAAGGACTTTTAGAAGGATGAATTTCCTGCAATTTGAGCCAAATGATCAGACATACTTGTCCCTGATTAATGGTTATGTCTCGGCAGAGAAACATTTTAATGTGCTGATGTTGTGGAATGATGTTAAGCGAAAGCTATCGTCAGATGGGCACAAAGGGATCAAATTTGACCACAATCTAGTTGATGCCTTCCTGTATGCTATGGTCAAGGGAGGTTTCTTTGATGCTGCTATGCAAGTTGTGGAGAAATCTCATGAGATGAAAATATTTGTTGATAAGTGGAGATACAAGCAAGCATTCATGGAGACCCATAAAAAGCTCAAAGTGGCAAAGTTGAGAAAAAGAAATACTAAAAAAATGGAAGCAGTTATAGCTTTCAAGAATTGGGCTGGCTTAAATGCATGA 1977 0.4188 MAKRVLTFLPHRQFSSIPEIPSLYSFLQPSVFALNRNRTQPICEEPQKLPTSPPKSLSLTPDQVSTLQTTLHKSLITSDTDEAWKSFKSLTSHQAFPPKPLTNSLITHLSSLGDIHNLKRAFASAVFLMERNPMVLESETIHAMLDSMKGANTAAPAFALVRCMFKNRYFVPFAMWGNVLVEIIRKSGNLAAFLPVFEESCRVALDEKLEFMKPDVAACNAALEGCCCELESVTDAERVVGTMSNLGVRPDELTFGFLGYLYAVKGLQEKINELEVLMGEFGCSNKKVFYSNLISGYVKSGNLASMESTILRSLSDEDRKDWNFGGETFCAVVKEYLRKGNIKGLANLINEAQKLEPSNIKADNSIGYGIVNACVSMGLSDKAHSILDEMNALGGSVGLGVYIPILKAYCKENRTAEATILVMEISSSGLQLDVETYDALIETSMSSQDFQSAFSLFRDMREARVPDLKGSYLTIMTGLMENHRPELMAAFLDEVVGDPRIEVGTHDWNSIIHAFCKAGRLEDARRTFRRMNFLQFEPNDQTYLSLINGYVSAEKHFNVLMLWNDVKRKLSSDGHKGIKFDHNLVDAFLYAMVKGGFFDAAMQVVEKSHEMKIFVDKWRYKQAFMETHKKLKVAKLRKRNTKKMEAVIAFKNWAGLNA* 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1246 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Lja2g1246 658 Pfam PPR repeat 371 392 IPR002885 -
Lja2g1246 658 Pfam PPR repeat 288 306 IPR002885 -
Lja2g1246 658 Pfam Pentatricopeptide repeat domain 421 465 IPR002885 -
Lja2g1246 658 PANTHER BNAC05G43320D PROTEIN 3 658 - -
Lja2g1246 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 215 250 IPR002885 -
Lja2g1246 658 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 504 538 IPR002885 -
Lja2g1246 658 Pfam PPR repeat family 508 551 IPR002885 -
Lja2g1246 658 TIGRFAM PPR: pentatricopeptide repeat domain 508 539 IPR002885 -
Lja2g1246 658 Gene3D Tetratricopeptide repeat domain 327 499 IPR011990 GO:0005515
Lja2g1246 658 Gene3D Tetratricopeptide repeat domain 500 656 IPR011990 GO:0005515
Lja2g1246 658 Gene3D Tetratricopeptide repeat domain 178 320 IPR011990 GO:0005515
Lja2g1246 658 PANTHER OS01G0788900 PROTEIN 3 658 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1246 2 11787710 11790068 Lja2g1246 2 11787710 11790068 ECH