Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1236 ATGTCACAAATGGCGATCCTCCATCGATCTCGCTTCCTTCTCTCCAAACCCACCGCCATCCGTACCATCGCCACATTCCCCTTCCTCTCTCAAGAACCCGAGCTCGCCGAACCCACTCCCAACCCCAACCCCAACCCCACCGCCTCCCCGCTCCCTCCCAACCCCGCTTCCGGCAGCCCTCTTTACGGCGAGAATTGGCGGAACCCCAATCCACGCCCCTCCGCCTCCTCCAGCGCCATCGCCCCCCTCGGCTACACCGGCCGCACCACATTGTCGGAATCCTACGACTCCCTCGAGCTCCAGAACTTGTTCGGTGAATACATGGCGTCGCAGAAATGGGATGAAGTCAAGGATCTGTTCGAGGCTTGGGTGAGGTCTCTCGACAAGAATGGGAAGCCTAACATGCCTGATGTTAACCTCTACAATCACTACCTCAGGGCCAACCTCATGATCGGAGCCTCCGCGGCTGAGTTGCTCGACATCCTTGCTCAGATGGATGATTTCAACGTCGTCCCTAATACGGCATCGTTTAACCTCGTCCTCAAGTCTATGCATCAAGCTGGTGAAACCTTTGCTGCTGAGAAACTCCTCGAACGGATGCTGGAGTCGGGAAATGAATCTCTCCCTGATGATGAATCATATGACTTGGTCATTGGAATGCTCTTTCTAACGGACCAGATTGATGCTGCATTCAAATATATAGATTTAACTTTGAAATCTGGTCACGTGTTGTCAATGAAGATATTTTCGGACTGTGTCAGGAGTTGTGTCAATAAGGGAAGGCTAGATTCATTGGTGACAATAATTGAAAGGTGCAAGGCAACAGAAAAAAACAAAGCTCTTTGCCCCTCCTGGACCACGTGCTATTTTATAGCTGAAATTGCATTGCGAGAGGATAATAGCAAGTTAGCCTTTTATAGCCTGGAGTTTATGGCTAAATGGATGGTAAAGGGTGAACGTGCAAACCCCCCCGTTTTGCTTTCTGTAGATGAAGGTTTAGTCGTGTCAGCTCTTTTGACTGCAGGTAGAACCTATAGTTCTGAGCTGCTAGGGGCATCATGGGCTGTTTTGCGCCACTCACTGCGTAAAAAGAAAGTTCCTAATCCAGAATCATACCTTGGAAGGATATATGCCCTTGCATCAATGGGGAATCTACAAAAGGCTTTTGGTGCTCTGTATGAATATGAGTCTGCTTATGGAGATTCCAATCAAGAATCTGAAGACTTGTTCTGCCCATTTACTTCTTTACATCCACTGGTTGTGGCATGCTCCAAGAAGGGTTTTGAGACTTTGGATAATGTTTATTTTCAACTGGAAAATTTAAGCCGTTCAGAGCGTCCTTATAAATCTGTTGCTGCACTAAACTGCATCATTTCAGGATGTGCTAACATATGGGACCTTGATCGTGCTTACCAAACTTTTGAATCGATCCAATCCACTTTTGGGTTGACCCCTGATATTCATTCATACAATGGCTTAATGCATGCCTTTGGGAAGCTCAAGAAGACACATGAAGCTTCAAAGGTGTTTGAGCACCTAACGAGTTTGGGTCTCAAACCTAATGCAAAATCATATTCTGTGCTTGTTGATGCCCACCTGATTAACCGGGATGTCAAATCTGCTCTGTCAGTTGTTGATGATATGTTGGCTGCTGGTTTTCAACCGACGAAAGAGATTCTTAAAAAAATAAGAAGGCGATGCATACGCGAGATGGACTATGAGACTAACGACAGACTGGAACTGCTTGCTCGAGATCTGAATTACCGATTGGGTGCAGAAGCCCGGCAAAACATTTTGTTTAATCTTAATTACAGTATGGATTATGCTTGA 1830 0.4667 MSQMAILHRSRFLLSKPTAIRTIATFPFLSQEPELAEPTPNPNPNPTASPLPPNPASGSPLYGENWRNPNPRPSASSSAIAPLGYTGRTTLSESYDSLELQNLFGEYMASQKWDEVKDLFEAWVRSLDKNGKPNMPDVNLYNHYLRANLMIGASAAELLDILAQMDDFNVVPNTASFNLVLKSMHQAGETFAAEKLLERMLESGNESLPDDESYDLVIGMLFLTDQIDAAFKYIDLTLKSGHVLSMKIFSDCVRSCVNKGRLDSLVTIIERCKATEKNKALCPSWTTCYFIAEIALREDNSKLAFYSLEFMAKWMVKGERANPPVLLSVDEGLVVSALLTAGRTYSSELLGASWAVLRHSLRKKKVPNPESYLGRIYALASMGNLQKAFGALYEYESAYGDSNQESEDLFCPFTSLHPLVVACSKKGFETLDNVYFQLENLSRSERPYKSVAALNCIISGCANIWDLDRAYQTFESIQSTFGLTPDIHSYNGLMHAFGKLKKTHEASKVFEHLTSLGLKPNAKSYSVLVDAHLINRDVKSALSVVDDMLAAGFQPTKEILKKIRRRCIREMDYETNDRLELLARDLNYRLGAEARQNILFNLNYSMDYA* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1236 609 Gene3D Tetratricopeptide repeat domain 98 320 IPR011990 GO:0005515
Lja2g1236 609 TIGRFAM PPR: pentatricopeptide repeat domain 488 522 IPR002885 -
Lja2g1236 609 TIGRFAM PPR: pentatricopeptide repeat domain 524 556 IPR002885 -
Lja2g1236 609 Gene3D Tetratricopeptide repeat domain 425 581 IPR011990 GO:0005515
Lja2g1236 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 486 520 IPR002885 -
Lja2g1236 609 MobiDBLite consensus disorder prediction 61 81 - -
Lja2g1236 609 MobiDBLite consensus disorder prediction 37 57 - -
Lja2g1236 609 Pfam PPR repeat 176 204 IPR002885 -
Lja2g1236 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 521 555 IPR002885 -
Lja2g1236 609 PANTHER OS07G0599000 PROTEIN 1 609 IPR044605 -
Lja2g1236 609 MobiDBLite consensus disorder prediction 33 81 - -
Lja2g1236 609 Pfam PPR repeat family 485 531 IPR002885 -
Lja2g1236 609 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1236 2 11678803 11683901 Lja2g1236 2 11678803 11683901 ECH