Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1226 ATGGAGGAGAGGAAGTTTGTGTGCAAGTACTGCAGCAAGAGGTTCCCTTGTGGGAAATCTCTTGGTGGACACATCAGGACCCACATGATGAGTGAGCATTCAGCTCAAGCCAATGAAGCTTCTGCAGAGAGAAGAAGTAATGCTGCTATGCTCAAGCTTGATGCTGCTGAGAGGAAGAGGAAGAGGGAGTCAGGGTATGGTGGCGGAGGAGGAGGAGGAGGAGATGACGGCGGCGGCGGAGGAGGTGGTGGTGCTGGTGGGAATCTCATGTATGGGCTGAGGGAGAATCCCAAGAAAACCACCAGGTTTGTGCATTCCAATGCCACTTCCTCGCAAATGGAGAAGTTCTGCAAAGAATGTGGGAAAGGTTTTCCATCATTGAAAGCTCTATGTGGTCACATGGCTTGTCACTCTGAAAAGGACAGAGGAACCAATCTCAGTGAGAAGCAGAAATTGGTTATGGATACTCAATCTGATACTGAAACCTCTGGTCCAACTCATCCAAGGAGATCGAAGAGGATGAGGTTCAACTTCAACAACAACAACAACAACAACAACAACCTCACCAACCACCACCCTTCTTCTTCTCTAGCAAATGGTTCATCTTCTGTGTCAGAAGTTGAGCAGGAACAAGAGGAAGTTGCAAGATGTTTGATGATGCTGTCTAAGGATTCTAGCTACAAGGGTCGTTTTGCTTTGGTTACAGATTCATCTGATAACAATTCTGTTGTTCTTGAAGCTAAGTCACCTTCTGTTACTTTCAATTTTGGTAAGAACTTTGTGTCCAATGCTTATGAGCTTGTGGAACAGAAGAAGAAGGTGCACAAGGATACCAAGTTGAAGTCTTCTGCTGAAATTGGTTATGATTCTGATAATTCTGATTCTGGGTATTTCAGATATGGTCCCAAAAAGGTGGACTCAGATGAAGAATCAAGTGATGGGTTTTTCAGGAATGAAGTTAAGTCCTCTAAAGTTGGATACTTGTCTGGGTTTGATGGCTATGATGTTGAATCAAGGAAGATGATGATGCTGAGCAGAGGAAGTAAGAAACTGGTTTTAGAGGATTTGGACAATGAACACAGCAAGTTTGGTTCAAGGAAGAGGCTCACCTATGATTCTGTTGGTCAAAAGACAGAAGCTTTGGATCATGGTGGTGGAAAAGGGTGGAAGAAGAATCATGGGTTGTTTACTAATGAAAGGGACAATAATGGGTCTGGCTCTGAAGATTCTGCATATGAGAGTGATGAAAACAGCACAGACAGTGATTCTTATCCTGCTACAAAGCCTCACAAGAACCTGAATGTGAAGAAATGCAATAGCAGCAAGGGGAAGAAGAAATTGAAGTCAAAGAAAAGCAAGGAACATGAGTGCCCAATTTGCAACAAGATTTTCAGGTCAGGGCAAGCTTTGGGAGGTCACAAAAGATCCCATTTTGTTGGAGGTTCTGAAGAGAACACTCTTGTGATTAGACCAGGTGCTGCTGCAGCTCCTGCTCCTGCTGCTGTTGCTGTTCCTTGCTTAATTGATCTTAATCTTCCTGCTCCTGTTGATGAATAG 1557 0.4406 MEERKFVCKYCSKRFPCGKSLGGHIRTHMMSEHSAQANEASAERRSNAAMLKLDAAERKRKRESGYGGGGGGGGDDGGGGGGGGAGGNLMYGLRENPKKTTRFVHSNATSSQMEKFCKECGKGFPSLKALCGHMACHSEKDRGTNLSEKQKLVMDTQSDTETSGPTHPRRSKRMRFNFNNNNNNNNNLTNHHPSSSLANGSSSVSEVEQEQEEVARCLMMLSKDSSYKGRFALVTDSSDNNSVVLEAKSPSVTFNFGKNFVSNAYELVEQKKKVHKDTKLKSSAEIGYDSDNSDSGYFRYGPKKVDSDEESSDGFFRNEVKSSKVGYLSGFDGYDVESRKMMMLSRGSKKLVLEDLDNEHSKFGSRKRLTYDSVGQKTEALDHGGGKGWKKNHGLFTNERDNNGSGSEDSAYESDENSTDSDSYPATKPHKNLNVKKCNSSKGKKKLKSKKSKEHECPICNKIFRSGQALGGHKRSHFVGGSEENTLVIRPGAAAAPAPAAVAVPCLIDLNLPAPVDE* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1226 518 MobiDBLite consensus disorder prediction 57 81 - -
Lja2g1226 518 MobiDBLite consensus disorder prediction 383 397 - -
Lja2g1226 518 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 518 - -
Lja2g1226 518 SUPERFAMILY beta-beta-alpha zinc fingers 116 477 IPR036236 -
Lja2g1226 518 MobiDBLite consensus disorder prediction 175 208 - -
Lja2g1226 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 142 IPR013087 -
Lja2g1226 518 ProSitePatterns Zinc finger C2H2 type domain signature. 457 477 IPR013087 -
Lja2g1226 518 Gene3D Classic Zinc Finger 1 67 - -
Lja2g1226 518 MobiDBLite consensus disorder prediction 398 434 - -
Lja2g1226 518 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lja2g1226 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Lja2g1226 518 SUPERFAMILY beta-beta-alpha zinc fingers 2 31 IPR036236 -
Lja2g1226 518 Coils Coil 39 59 - -
Lja2g1226 518 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 518 - -
Lja2g1226 518 SMART c2h2final6 455 477 IPR013087 -
Lja2g1226 518 SMART c2h2final6 6 28 IPR013087 -
Lja2g1226 518 SMART c2h2final6 115 137 IPR013087 -
Lja2g1226 518 ProSiteProfiles Zinc finger C2H2 type domain profile. 455 477 IPR013087 -
Lja2g1226 518 ProSitePatterns Zinc finger C2H2 type domain signature. 117 137 IPR013087 -
Lja2g1226 518 MobiDBLite consensus disorder prediction 152 209 - -
Lja2g1226 518 MobiDBLite consensus disorder prediction 435 451 - -
Lja2g1226 518 MobiDBLite consensus disorder prediction 377 451 - -
Lja2g1226 518 Pfam C2H2-type zinc finger 455 477 - -
Lja2g1226 518 Pfam C2H2-type zinc finger 6 29 - -
Lja2g1226 518 Pfam C2H2-type zinc finger 117 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1226 Lja-Chr2 11608301 11609857 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja2g1226 zf-C2H2_6 1.5e-06 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1226 2 11608301 11609857 Lja2g1226 2 11608301 11609857 ECH