Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1225 ATGGACGACAAAGACAAACCACCTCCCGATCCATCAACCGCCGCTGAGTTCGCAAGCTGGATGCTATGCGCCGACGACTCTGATTTCTTCTCCGGTGACAGGGAGAGAAGCATACTCGGCGACTTCGGCTGGAACCTCGAACCGGACCGGATCTCCGCCGCCGACGATGGATTGTGGCTGCCGCCTCATGCCGCTCCGTCCGGTTCGATCGAAATCAAACCGACGGCGTCTGCGTCGATTAACCAATCGGTTTCTTCCAGCTCCAGCGAGGATCCACCGGAGAAGTCCACCGTCTCCGACGAGAAGCCGATTGAAATACCGAGTAGTAAAAGTAAGAAGAAGGGGCAAAAGCGAATACGGCAGCCGCGGTTTGCATTTATGACCAAAAGTGAAGTTGATCATCTTGAAGATGGCTACAGATGGAGGAAGTATGGTCAGAAGGCAGTTAAAAACAGTCCATTCCCTAGAAGCTATTATCGCTGCACAAACAGCAAATGCACGGTGAAGAAAAGGGTTGAACGCTCTTCTGAGGATCCAACTACTGTGATTACTACATATGAAGGCCAACATTGTCATCACACCGTTGGATTTCCTCGAGGGGGCTTCATTAATCATGAAGCTGCTTTCACCAGCGGCCAGTTGGGTCCTCCAATGTCACGATTCTATTATCCAATTCAATTATCAAGAGAGAACACTTCAAGCAGCATTTCTCAGCCTTCCCAAGCACATGATGAAGCTGGAGGATCAAGCACGATGATGTCAGCTGATGACGATGCGTCGCCACAGCCTCCTACGGATGAAGGACTGCTTGGAGATATTGTACCTCCAGGAATGCGCAACAGATCATGA 849 0.5065 MDDKDKPPPDPSTAAEFASWMLCADDSDFFSGDRERSILGDFGWNLEPDRISAADDGLWLPPHAAPSGSIEIKPTASASINQSVSSSSSEDPPEKSTVSDEKPIEIPSSKSKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPTTVITTYEGQHCHHTVGFPRGGFINHEAAFTSGQLGPPMSRFYYPIQLSRENTSSSISQPSQAHDEAGGSSTMMSADDDASPQPPTDEGLLGDIVPPGMRNRS* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1225 282 Gene3D WRKY domain 122 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja2g1225 282 SUPERFAMILY WRKY DNA-binding domain 127 193 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lja2g1225 282 MobiDBLite consensus disorder prediction 72 93 - -
Lja2g1225 282 ProSiteProfiles WRKY domain profile. 130 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g1225 282 MobiDBLite consensus disorder prediction 230 282 - -
Lja2g1225 282 PANTHER WRKY TRANSCRIPTION FACTOR 57-RELATED 17 207 - -
Lja2g1225 282 SMART WRKY_cls 135 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g1225 282 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 17 207 IPR044810 GO:0003700
Lja2g1225 282 MobiDBLite consensus disorder prediction 94 112 - -
Lja2g1225 282 MobiDBLite consensus disorder prediction 230 258 - -
Lja2g1225 282 Pfam WRKY DNA -binding domain 136 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lja2g1225 282 MobiDBLite consensus disorder prediction 53 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1225 Lja-Chr2 11595662 11601161 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lja2g1225 WRKY 3.7e-25 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1225 2 11595662 11601161 Lja2g1225 2 11595662 11601161 ECH