Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g1169 ATGTCTGAGGTTATGAAAGACTCTGCCATAAAGCTGTTTGGGAGAACGATTTCTCTGCCACATAACAGAAAGGTTTCTGCCAATGATTCTTCTTCTGATCATAGTCCACCTTCATCTTCATCTTCTCCTGGTGAATTGAGCTCTGCAACGAAACATGAAGCAGAAAGAATTGAGGAACCTTCAAAGAAAGAACTCATCACATCAACACAAGATAAAAATCTCTCACATCAATCCACAGAGGATTCAAAATCCCCCACATCTTCAACCATTTTTGAGAACCCCAAGACTCCCTCATCTGAAAGAGAAACCTCTCTTCTGAAATCCTCCAAAAATGGAGAACAGAGTGAGACAAGTGAATCACAAGACAACAAAGGTCTAAAGAAACCAGACAAAATTCTCCCATGTCCGCGATGCAACAGCATGGATACAAAATTCTGCTACTACAACAACTACAACGTCAACCAGCCCCGCCACTTCTGCAAGAACTGCCAAAGGTACTGGACCGCCGGAGGCACCATGAGGAACGTGCCCGTAGGCGCAGGCCGCCGCAAGAACAAGAACATTTCCTCTTCTTGTTCTTCTGCGGCCGCCTCGCATTATCGCCAAATGATGATGATGGTTCCTGAGACCCTTCAAGCCAATGAAGAAGCTGTGTTGACCTTTGGATCAGATTCTTCTCCTCTCTGCAATTCCATGGCTTCTGGACTGAGCCTTGCAGATAAAACACAACCCAAAGCTCTGTTTCATGCACCAAAACAGAGCATTTTTGTCAGAGAAGATAGTAATGGAGATGATAGAACTTCATCTGAAAAGAGAGGCAATTTTGGCTCATATGAAGAATCAATTGATAAGAATTGTCAAGTTTTTCCTCCTCAATTTCCCTTCCAAGGTTCTTCTTCTATCCCTTGGCCTTATCCATGGAACCCTGCAATGCCTTCCCCTGCTTTTTGCCAACTAAACTACCCTGTGCCATTTTATCATGCACCAGCATTCTGGGCACACCCACACCCTATCTCTCCTCAATCTTCTGCTAACTCACCTGCTTTGGGGAAACACTCAAGGGAAGGGGAAATTCTCTTTCCATCAAACTCAGAGAAGGAAAAGTCTAGTTCTAGAAGTAATGGTGTGTTGATTCCAAAGACACTGAGAATTGATGACCCTAATGAAGCTTCAAAGAGTTCTATATGGTCAACATTGGGGATCAAGCATGATGAGAAGGGAAACTCTCTCAATGGAGGAGGAAGCCTTTTCAAGGGATTTGACAAGAAGAGTCATGTTGCTGAAGCATCCCCTTTGTTGCATGCAAACCCTGCAGCTTTGTCAAGATCTCGTATCTTCCATGAGAGGACTTGA 1353 0.4405 MSEVMKDSAIKLFGRTISLPHNRKVSANDSSSDHSPPSSSSSPGELSSATKHEAERIEEPSKKELITSTQDKNLSHQSTEDSKSPTSSTIFENPKTPSSERETSLLKSSKNGEQSETSESQDNKGLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNISSSCSSAAASHYRQMMMMVPETLQANEEAVLTFGSDSSPLCNSMASGLSLADKTQPKALFHAPKQSIFVREDSNGDDRTSSEKRGNFGSYEESIDKNCQVFPPQFPFQGSSSIPWPYPWNPAMPSPAFCQLNYPVPFYHAPAFWAHPHPISPQSSANSPALGKHSREGEILFPSNSEKEKSSSRSNGVLIPKTLRIDDPNEASKSSIWSTLGIKHDEKGNSLNGGGSLFKGFDKKSHVAEASPLLHANPAALSRSRIFHERT* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g1169 450 PANTHER CYCLIC DOF FACTOR 2 1 450 IPR045174 GO:0003700|GO:0006355
Lja2g1169 450 MobiDBLite consensus disorder prediction 67 119 - -
Lja2g1169 450 MobiDBLite consensus disorder prediction 258 277 - -
Lja2g1169 450 MobiDBLite consensus disorder prediction 14 133 - -
Lja2g1169 450 Pfam Dof domain, zinc finger 130 187 IPR003851 GO:0003677|GO:0006355
Lja2g1169 450 ProSiteProfiles Zinc finger Dof-type profile. 133 187 IPR003851 GO:0003677|GO:0006355
Lja2g1169 450 MobiDBLite consensus disorder prediction 256 277 - -
Lja2g1169 450 MobiDBLite consensus disorder prediction 49 66 - -
Lja2g1169 450 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 450 - -
Lja2g1169 450 MobiDBLite consensus disorder prediction 21 48 - -
Lja2g1169 450 ProSitePatterns Zinc finger Dof-type signature. 135 171 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g1169 Lja-Chr2 11093820 11097163 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g1169 6 449 C2C2-Dof Transcription Factor Family AT3G47500 39.712 1.21e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja2g1169 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g1169 - - lja:Lj2g3v1277700.1 743.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g1169 2 11093820 11097163 Lja2g1169 2 11093820 11097163 ECH
Lja2g1169 2 11093820 11097163 Lja1g5531 1 95575368 95578386 ECH
Lja2g1169 2 11093820 11097163 Lja4g2141 4 22968548 22971116 ECH
Lja2g1169 2 11093820 11097163 Lja1g2848 1 34280286 34284001 ECH
Lja2g1169 2 11093820 11097163 Lja4g2141 4 22968548 22971116 PCT