Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0891 ATGTCACCCGAGGACACATCCCCCGCAAAGCCCGCAAAAGACAGCGACAACAACCAAGGCTCCGGCAACGGTGGTCGGAAAGCCTCCTCCACCGCAAGGCCACCGGAGCAAGGCCTCAAGTGCCCTCGCTGCGACTCACCCAACACCAAATTCTGCTACTACAACAACTACAGCCTCACGCAGCCGCGCCATTTCTGCAAAACATGCCGCAGGTACTGGACCAAAGGCGGCGCTCTCCGCAACGTCCCCATCGGCGGCGGCTGCAGGAAGAACAAGAAGGTGAAATCCTCCAGACTCTCGACTGATTCCAAGGACTCTGGCTCCTCCTCCGATCACATTGGCGGTGGCCTGAAATTCCTCCATTCTCTTTCACCTTCCATGGATTTTCAGCTCGGTGGGATGCCATTACCATTCCCTCGCCTCCAACACCACCCTCCAATCTACAACCAGTTTTCTTCCTATCTCGGCGACAGTTCCGCCCCTGCTTCTTCCGGTTTCAACCTTGACCCCTCAAACTCCCTTGCTTCTCTGAACTACCCGTTTTCCACCGCCACCGGAAACGGTTACACCGGCGCCATACAGGGCATGAGCGCGTTGAGCGTGAGCAACACACTCGCCTCTAACATTGAGTCTTTGAGCTCCATGAACCAGGACTTGCACTGGAAGCTTCAGCAGCAGCGTTTATCGATGATGTTCAGTGGAGAAAACCAGAAAGAAAACAACAGTGTTGTTACACCAGTTAATACTCTTGAGAACCAGAACCAGAACCAGAGACTTCAACCCATTTTGTTTCAGAATCTCGAGCTTTCAAGGACTGAAACTGATTTCTCCATTGGGAATTCCAGAAAAGAAGGGCAAAATGGGGATACACCAACTGAGTGGTTTTTTGGGAATTACAATAACGCTGCCTCGGTGACTCCTACACCAACCACCACTAGTAGCGGCGGCGGCGCTGGCCATGATAATGTTGGCAACTGGAGTAATGGGGTTCATGCCTGGGGTGATGTGCAGCAGCAGCAGCAGCAGCAATATAATGGTCTGCCCTAG 1047 0.531 MSPEDTSPAKPAKDSDNNQGSGNGGRKASSTARPPEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSRLSTDSKDSGSSSDHIGGGLKFLHSLSPSMDFQLGGMPLPFPRLQHHPPIYNQFSSYLGDSSAPASSGFNLDPSNSLASLNYPFSTATGNGYTGAIQGMSALSVSNTLASNIESLSSMNQDLHWKLQQQRLSMMFSGENQKENNSVVTPVNTLENQNQNQRLQPILFQNLELSRTETDFSIGNSRKEGQNGDTPTEWFFGNYNNAASVTPTPTTTSSGGGAGHDNVGNWSNGVHAWGDVQQQQQQQYNGLP* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0891 348 MobiDBLite consensus disorder prediction 1 41 - -
Lja2g0891 348 Pfam Dof domain, zinc finger 37 93 IPR003851 GO:0003677|GO:0006355
Lja2g0891 348 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 17 338 - -
Lja2g0891 348 MobiDBLite consensus disorder prediction 84 111 - -
Lja2g0891 348 ProSiteProfiles Zinc finger Dof-type profile. 39 93 IPR003851 GO:0003677|GO:0006355
Lja2g0891 348 MobiDBLite consensus disorder prediction 307 321 - -
Lja2g0891 348 MobiDBLite consensus disorder prediction 12 30 - -
Lja2g0891 348 ProSitePatterns Zinc finger Dof-type signature. 41 77 IPR003851 GO:0003677|GO:0006355
Lja2g0891 348 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 338 IPR045174 GO:0003700|GO:0006355
Lja2g0891 348 MobiDBLite consensus disorder prediction 307 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0891 Lja-Chr2 8325763 8327154 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0891 7 348 C2C2-Dof Transcription Factor Family AT5G65590 38.483 6.16e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja2g0891 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja2g0891 - - vun:114173233 400.979