Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g0300 ATGAACACAAACACCAACACCAACACCAGCATCACCAAAATGGATCGGATCAAGGGTCCATGGAGTCCGGAGGAGGATGAAGCTTTGCAGAGGCTGGTGGAGAAGCACGGCCCGAGGAACTGGTCGCTGATCAGCAAGTCGATTCCGGGGAGGTCTGGGAAATCGTGCAGGCTGCGGTGGTGTAATCAGTTGTCGCCTCAGGTGGAGCACCGTGCCTTCACGGCGGAGGAGGATGACACCATAATCAGAGCCCATGCCCGATTCGGTAACAAGTGGGCCACCATCGCCAGACTCCTCTCCGGGAGGACTGATAACGCGATTAAGAATCACTGGAACTCTACCTTGAAGCGGAAGTGCGCTTCCTTCATGATGGATGACCACAACGCGCCGCCGCTTAAGAGGTCTGTTAGCGCCGGCGCCGCCACGCCGGTTTCCACCGGGCTCTACATGAACCCGCCGTCTCCGGGGAGTCCCTCCGGATCTGATGTCAGCGAGTCCAGCGTACCGGTGTGTACCCCCTCCGCCGCCGCCGCCGCGCATGTTTTCCGACCTGTGCCGAGGACCGGCGGGGTTCTACCTCCCGTAGAAACGACGTCGTCCTCCAATGACCCTCCAACTTCACTTTCCCTCTCTCTCCCCGGCGTGGATTCAACATCGGAGGAAACCGCTCCTGCTCCTGCTCAGCCGCCAAGTGCTATTCCTTTGCTGCCGATAATGGCGGCGCCGGTTCAGTTGGTGGTGCCGCCCCAACCTCAGGTACAGGATCCGTCAACGGCGGTGATGCAGAAGGTTTCAGGGCCGTTCAATTTCAGTGCGGAGTTGCTGGGTGTGATGCAGGAGATGATAAAGAAAGAGGTGAGGAGTTATATGCAGCAGAATGGGATGTGTTATTCTCATGGAAGTGATGATGGGTTCAGGAACGCTGCGGTGAAACGAATTGGGATTAGCAGAATCGATTCGTAG 963 0.5753 MNTNTNTNTSITKMDRIKGPWSPEEDEALQRLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTAEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASFMMDDHNAPPLKRSVSAGAATPVSTGLYMNPPSPGSPSGSDVSESSVPVCTPSAAAAAHVFRPVPRTGGVLPPVETTSSSNDPPTSLSLSLPGVDSTSEETAPAPAQPPSAIPLLPIMAAPVQLVVPPQPQVQDPSTAVMQKVSGPFNFSAELLGVMQEMIKKEVRSYMQQNGMCYSHGSDDGFRNAAVKRIGISRIDS* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g0300 320 MobiDBLite consensus disorder prediction 143 168 - -
Lja2g0300 320 Gene3D - 71 135 - -
Lja2g0300 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 68 IPR017930 -
Lja2g0300 320 PANTHER MYB PROTEIN-RELATED 9 286 - -
Lja2g0300 320 MobiDBLite consensus disorder prediction 1 15 - -
Lja2g0300 320 SMART sant 17 66 IPR001005 -
Lja2g0300 320 SMART sant 69 117 IPR001005 -
Lja2g0300 320 CDD SANT 72 115 IPR001005 -
Lja2g0300 320 Gene3D - 17 69 - -
Lja2g0300 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 119 IPR017930 -
Lja2g0300 320 Pfam Myb-like DNA-binding domain 72 114 IPR001005 -
Lja2g0300 320 Pfam Myb-like DNA-binding domain 18 64 IPR001005 -
Lja2g0300 320 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Lja2g0300 320 MobiDBLite consensus disorder prediction 193 225 - -
Lja2g0300 320 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Lja2g0300 320 ProSiteProfiles Myb-like domain profile. 13 64 IPR001005 -
Lja2g0300 320 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 9 286 - -
Lja2g0300 320 MobiDBLite consensus disorder prediction 1 22 - -
Lja2g0300 320 MobiDBLite consensus disorder prediction 185 231 - -
Lja2g0300 320 CDD SANT 20 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g0300 Lja-Chr2 2758008 2759889 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g0300 7 319 MYB Transcription Factor Family AT4G37260 49.854 1.10e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja2g0300 Myb_DNA-binding 2e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g0300 2 2758008 2759889 Lja4g3387 4 64101993 64103624 ECH
Lja1g4130 1 52410876 52411578 Lja2g0300 2 2758008 2759889 ECH
Lja5g3113 5 60836478 60837663 Lja2g0300 2 2758008 2759889 ECH
Lja2g0300 2 2758008 2759889 Lja2g0300 2 2758008 2759889 ECH
Lja2g0300 2 2758008 2759889 Lja4g3671 4 68527118 68528068 PCT
Lja4g3387 4 64101993 64103624 Lja2g0300 2 2758008 2759889 PCT