Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g6021 ATGCTGTCAAATCATATCCAGAACGGAATCGAAACGGCGAGGCTCGTTTGGTCGCGGATTCCCAATTCCGAGGACTCACAGCTCCTCGACGATGACGGCGTTGGCCTCCTGAAGAAGAACGATGGAAGTGGCGCTGAGAGCCTTGACTATGAAGTCATTGAGAATTTCGCTTATCGTGAAGAACAGGCGCAAAGAGGGAAGCTATTTGTGAGTTATTTGCTGGTGGTGAAATGGTTCTTTGCCTTGCTCATTGGCATATGTACTGGACTTGCTGCTGTTTTCATCAATATTTCTGTTGAAAATTTTGCTGGCTGGAAGTTCTCGGTGACATTTAATATTATTCAGAAATCATATGTTGCTGGCTTCATTGTATATGTCCTCATCAACTTGGCTTTGGTTGCTTCCTCTGTATATATTGTCACCCAATTTGCACCAGCTGCTGCTGGATCTGGTATTCCTGAAATCAAGGGTTACTTAAACGGAGTTGATATTCATGGCATCCTACTTTTCAGAACTTTGATTGGAAAGATATTCGGAAGCATTGGTTCAGTCGGAGGAGGCCTTGCTTTGGGTAAAGAAGGTCCTCTTGTCCACACTGGTGCTTGTATTGCTTCTTTGCTTGGACAAGGTGGATCCACTAAGTATCATCTAAATTCAAGGTGGTTTAATGTATTCAAAAGTGACCGGGATCGTCGTGATCTTGTAACCTGTGGATGTGCAGCTGGAGTTGCTGCTGCATTTAGAGCTCCGGTTGGTGGTGTACTGTTTGCATTGGAAGAGGTTACATCTTGGTGGAGGAGTCAACTCATGTGGCGTGTCTTTTTCACTTCTGCTATTGTGGCTGTTGTGGTGCGAACTGCGATGGGGTGGTGTAAGAGTGGAAAATGTGGACATTTTGGGTCAGGCGGATTCATAATATGGGATATATCAGATGGTCAAGAGGATTATTCATTTGCAGAGCTATTGCCAATGGCTATCATTGGGGTTATTGGAGGCCTACTAGGTGCTTTATTCAATCAGCTTACACTTTATATCACTACATGGCGTCGAAATCATCTTCACAAGAAAGGTAGCAGAGTCAAGATCGTTGAAGCATGCATTGTCTCCCTTTTGACATCAGTGATTTCATTTGGATTGCCACTTCTAAGGAAATGTAGTCCATGCCCGGAATCTGATCCTTCATCTGGTATTGAATGTCCACGACCTCCTGGAATGTATGGGAATTATGTAAATTTTTTTTGTAGCAAGGACAAGGAATACAATGATCTTGCAACTATTTTCTTCAATACTCAGGATGACGCCATAAGGAATTTGTTCAGTGCAAAAACAATAAATGAGTACAGTTCCCAAAGTTTATTAACCTTTTTGGTTATGTTTTATGCTTTAGCGGTTGTGACATTTGGTACTGCTGTGCCAGCTGGGCAATTTGTTCCTGGTATAATGATAGGATCAACGTATGGACGTCTTGTCGGCATGTTTGTTGTTAAGTATTACAGAAAACTCAACATTGAAGAGGGAACGTATGCTTTGCTAGGAGCTGCATCTTTTCTTGGAGGTTCAATGAGGATGACAGTGTCTCTATGTGTTATTATGGTTGAAATCACAAATAACTTAAAACTTTTACCCCTTATTATGCTTGTTCTTCTTATATCAAAGGCTGTTGGGGATGCTTTTAATGAAGGAATCTACGATGAACAGGCTCGACTGAGGGGCATACCATTACTGGAATCAAGGCCTAAATATGAGATGCGGAATATGACAGCAAAGGAGGCCTGTGGGAGTGGAAGGGTGGTTTCTTTCCCTCGTGTTGCTAAGGTTTCAGATGTAGTCTCCATTCTGCAGAGCAACAAACACAACGGTTTTCCAGTGATTGACCATACAAGAAGTGGAGAACCACTAGTTATTGGATTAGTGCTTCGGAGTCATTTACTGGTAATATTGCAGTCCAAGGTTGATTTCCAGCATAGTCCTTTACCCTCTGATCTGAGAGGTGGGGGCAGGTCAATAAGGCATGATTATGGTGAATTTGCAAAGCCTGTTTCCAGTAAAGGAATATGTCTTGATGATGTACATTTAAGTTCAGATGACCTGGAAATGTTCATAGATCTTGCCCCATTTTTGAATCCCTCCCCTTATATCGTACCAGAAGACATGTCTTTGACAAAGGTATACAATCTTTTCCGCCAACTTGGTTTGAGACATTTATTTGTTGTACCTCGTCCATCGCGTGTGCTTGGTTTGATAACCAGAAAAGATTTGTTGATTGAGGACACAGATGCGAATACATTAGAGCTTCAGGCAACTAGTGTAAGAGTTCGGCATCCAGGTAAAAGATTGATGGCAAGGAATGCAGATGTGGAGAGCCCTCTGCTAAATGGTCTTCTGGTTCAGAATCAGATACCTGACTAA 2409 0.4234 MLSNHIQNGIETARLVWSRIPNSEDSQLLDDDGVGLLKKNDGSGAESLDYEVIENFAYREEQAQRGKLFVSYLLVVKWFFALLIGICTGLAAVFINISVENFAGWKFSVTFNIIQKSYVAGFIVYVLINLALVASSVYIVTQFAPAAAGSGIPEIKGYLNGVDIHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWFNVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFAELLPMAIIGVIGGLLGALFNQLTLYITTWRRNHLHKKGSRVKIVEACIVSLLTSVISFGLPLLRKCSPCPESDPSSGIECPRPPGMYGNYVNFFCSKDKEYNDLATIFFNTQDDAIRNLFSAKTINEYSSQSLLTFLVMFYALAVVTFGTAVPAGQFVPGIMIGSTYGRLVGMFVVKYYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGIYDEQARLRGIPLLESRPKYEMRNMTAKEACGSGRVVSFPRVAKVSDVVSILQSNKHNGFPVIDHTRSGEPLVIGLVLRSHLLVILQSKVDFQHSPLPSDLRGGGRSIRHDYGEFAKPVSSKGICLDDVHLSSDDLEMFIDLAPFLNPSPYIVPEDMSLTKVYNLFRQLGLRHLFVVPRPSRVLGLITRKDLLIEDTDANTLELQATSVRVRHPGKRLMARNADVESPLLNGLLVQNQIPD* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g6021 802 Pfam Voltage gated chloride channel 134 555 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja1g6021 802 PRINTS Plant CLC chloride channel signature 423 439 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja1g6021 802 PRINTS Plant CLC chloride channel signature 261 269 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja1g6021 802 PRINTS Plant CLC chloride channel signature 51 59 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja1g6021 802 PRINTS Plant CLC chloride channel signature 293 300 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja1g6021 802 PRINTS Plant CLC chloride channel signature 275 285 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja1g6021 802 SUPERFAMILY CBS-domain pair 580 754 IPR046342 -
Lja1g6021 802 SUPERFAMILY Clc chloride channel 55 577 IPR014743 -
Lja1g6021 802 CDD CBS_pair_voltage-gated_CLC_euk_bac 597 754 - -
Lja1g6021 802 ProSiteProfiles CBS domain profile. 586 653 IPR000644 -
Lja1g6021 802 Pfam CBS domain 708 754 IPR000644 -
Lja1g6021 802 Pfam CBS domain 597 647 IPR000644 -
Lja1g6021 802 CDD ClC_6_like 46 575 - -
Lja1g6021 802 ProSiteProfiles CBS domain profile. 707 763 IPR000644 -
Lja1g6021 802 Gene3D - 596 760 IPR046342 -
Lja1g6021 802 Gene3D Clc chloride channel 70 576 - -
Lja1g6021 802 PANTHER CHLORIDE CHANNEL PROTEIN CLC-D 4 793 - -
Lja1g6021 802 PRINTS Chloride channel signature 562 576 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja1g6021 802 PRINTS Chloride channel signature 240 259 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja1g6021 802 PRINTS Chloride channel signature 524 543 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja1g6021 802 PRINTS Chloride channel signature 176 195 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja1g6021 802 PRINTS Chloride channel signature 506 522 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja1g6021 802 PRINTS Chloride channel signature 471 491 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja1g6021 802 PRINTS Chloride channel signature 145 162 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja1g6021 802 SMART cbs_1 596 648 IPR000644 -
Lja1g6021 802 SMART cbs_1 710 758 IPR000644 -
Lja1g6021 802 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 4 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g6021 Lja-Chr1 111104430 111113982 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g6021 1 771 Ion Channels AT5G26240 83.441 0.0 1251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g6021 K05016 - gmx:100811908 1469.52