Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5663 ATGGGTTTGTCTTCTCTTCACGTTTGCATGGACACAGCAGAGCATTGGTTACAGGGCACAATTCACGATGAGTCTGGAATGGATTCTTCCTCACCTTCGGGTGACATGCTTACATGCTCAAGGCCCATGATGGAGAGGAGGCTGAGACCCCCACTTGACCAAGCTCTCAAGTGCCCAAGGTGTGACTCTGCCCACACCAAGTTCTGCTACTACAACAACTACAGCCTCTCTCAGCCCAGGTACTTCTGCAAGACTTGCAGAAGGTATTGGACCAAGGGAGGAACTCTCAGAAACATCCCCGTCGGCGGAGGATGCAGAAAGAACAAGAAAGTTTCAAACAAGAAATCCAATGACCCTCATTTGTCTAACAATAATCAAAACCAATCCCAACCAGGAGTACCCTCCTACCATCATCACAACCCTAAAGATCTTCAACTCTCTTTCCCAGCTGATGTGCAATTTTCCCACCTGAGTAACTTGCTTGGGGCTAATGCTGGAGCATTAGGAAACCCTAATTTCATGGAGAGCAAGTATGGAAACATTGGCATGCTTGATAACCCTAGGCCTATTGATTTCATGGAGAGTAAGTTGGAAGGCATAATTGGGAGTAGTGGTTCTAGGAATTTTGATTTTTTTGGAAATAGTCATCATGATATGGGCATGGCTGTTGGGCTGGGAGATCATCATATGAGTGGTACTCAAAATGGGATGCCACCAAATTTTCATGGTCTTTGCTCTCCTTCATTTGGTGGCATGTCCTTTGATGGGGTTGGCAGCCACAATAACAACAATGGAGCTTACTTAATGGACTCTTGCCAGAGGCTTATGCTGCCCTATGATCATGCCAATGATCAGGATCATAATGAGGCTTCAATTGATGTGAAGCCAAACCCTAGACTATTATCCCTTGAATGGCAAGACCAGGGTTGCTCTGATGCTGGAAAAGAATCATATGGGTATCTCAACGGTCCAGGATCATGGACTGGTGGCATGATGAACGGCTATGGATCCTCCACAAACCCTTTGATCTAA 1032 0.4593 MGLSSLHVCMDTAEHWLQGTIHDESGMDSSSPSGDMLTCSRPMMERRLRPPLDQALKCPRCDSAHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSNKKSNDPHLSNNNQNQSQPGVPSYHHHNPKDLQLSFPADVQFSHLSNLLGANAGALGNPNFMESKYGNIGMLDNPRPIDFMESKLEGIIGSSGSRNFDFFGNSHHDMGMAVGLGDHHMSGTQNGMPPNFHGLCSPSFGGMSFDGVGSHNNNNGAYLMDSCQRLMLPYDHANDQDHNEASIDVKPNPRLLSLEWQDQGCSDAGKESYGYLNGPGSWTGGMMNGYGSSTNPLI* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5663 343 PANTHER - 12 335 - -
Lja1g5663 343 MobiDBLite consensus disorder prediction 101 142 - -
Lja1g5663 343 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 335 IPR045174 GO:0003700|GO:0006355
Lja1g5663 343 MobiDBLite consensus disorder prediction 117 135 - -
Lja1g5663 343 ProSiteProfiles Zinc finger Dof-type profile. 56 110 IPR003851 GO:0003677|GO:0006355
Lja1g5663 343 ProSitePatterns Zinc finger Dof-type signature. 58 94 IPR003851 GO:0003677|GO:0006355
Lja1g5663 343 Pfam Dof domain, zinc finger 53 110 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5663 Lja-Chr1 99894686 99896985 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5663 1 339 C2C2-Dof Transcription Factor Family AT5G62940 41.753 2.58e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja1g5663 zf-Dof 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5663 - - gmx:778107 466.077