Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5531 ATGCTTCCATTGCCAACTGAGACCAAAAACCCAAACAAAACTGAAACACTCAAAACACGCTCGCTTGCAGTTACGAACCACCTGAAACCGCCGCAACCGTCTTCCGCATTTCTCGCAACCGTCTCCCGCGTTTTCCGCAACCGTCTCCGCGTTTTCCGCGCACTCTGTTTGGATCCCGAGAAAATGCAGGAAATGAAGGATCCTGCCATCAGGCTTTTCGGCCAGAAGATTCGCTTTACCGGGGAGGAAGCAGAGGCTGCTGCCGTTGCCGCCGCCGGGAAAATTACCTCCACGGCGGCGGCGATTGATGTTGACAAAGAGGAAGAAGAAGAAGATGATGTCGATAGGTCAGAGCCTGAAATTGATAAAGTAGACCAAGGAGATAAGGATCCTCCAGCTGAAAAAGTTACTGAGAAAAAGAAAGAGGCTGATCCTCCTCCAAATACAGTTGCAGAGACCAAGGATATTCAGAACCCAAAAACACCTCCCATAGATGAAGAAACTGCAAATTCAGAAACGGGTAAATCGGAGAACGATCAAAATGATGAAAACAACAACATCAACTCTGACGACAAAACACTTAAGAAGCCAGATAAGCTTCTCCCGTGTCCACGCTGCAAGAGCATGGACACCAAATTCTGTTACTACAACAACTACAACGTGAACCAGCCACGCTATTTCTGCAAAGCGTGTCAGAGATACTGGACTGCCGGTGGCACCATGAGGAATGTGCCGGTCGGGGCCGGGAGGCGAAAGAACAAGAACTCTTCCTCGCATTATCACCACATAACAATCTCGGAGGCTCATCAAGCGGCTAGAATTGGTGCTGCTAATGGAACTCACCATGCACTGAAATCCAATGGTAGAGTTCTCAGCTTTGGAATTGACCCTCCGATCTGTGATTCAGTGGCATCTGTGTTGAACCTTGGAGATTCGAAAAAGGCTCTTAGCGGCACAAGAAACAGGTTTCATAATCATACTAGTGAAGAGCAGAAAATTCCTGTTAGTGGGGAAAATGGCGAGGACTGCTCATCTTCAATCACGGTCTCAAATTCCATGGAGGAAACCGGGAAAAGCACAATCCAAGAAACATTTCTACCAAACAATGGTTTCGTTCCTCAACAAGTTCAATGCTTTTCTAGTGTTCCTTGGCCTTATCCGTGGGGTTCTGGAGTTCCCTCACAACCACAACCCGCTTTGTGTCCTCCAGGGTTTTTCTACCCTGCCGCTCCTATGTGGAATTGGAGTGTTCCTTGGTTTTCATCTCACACTTCTGCTCCAAACCAGATGTCCCCTAGCTCCGGGTCAAATTCTCCAACCCTTGGAAAACACTCGAGGAATGATGATGACATGGTTAAAGAACAAGATCTTCAGCAGCAAGAAGAAGAATCATCACAAAGGCACAGAAACGGGTGTGTCTTGGTTCCCAAAACCTTGAGAATTGATGACCCGGATGAAGCTGCTAAGAGTTCTATATGGGCCACTCTTGGAATCAAGAATGAATGTGTGAATGTGAGTGGTGGAGGAATGTTCAAGGCCTTCCAATCAAAAAAGAAGGAAGAAAAAAATCATGTTTTGGAAACATCTTCAGTGTTGCTGGCTAACCCTGCAGCTTTGTCTAGATCCCTTAATTTTCATGAGAACACCTGA 1650 0.4673 MLPLPTETKNPNKTETLKTRSLAVTNHLKPPQPSSAFLATVSRVFRNRLRVFRALCLDPEKMQEMKDPAIRLFGQKIRFTGEEAEAAAVAAAGKITSTAAAIDVDKEEEEEDDVDRSEPEIDKVDQGDKDPPAEKVTEKKKEADPPPNTVAETKDIQNPKTPPIDEETANSETGKSENDQNDENNNINSDDKTLKKPDKLLPCPRCKSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSSSHYHHITISEAHQAARIGAANGTHHALKSNGRVLSFGIDPPICDSVASVLNLGDSKKALSGTRNRFHNHTSEEQKIPVSGENGEDCSSSITVSNSMEETGKSTIQETFLPNNGFVPQQVQCFSSVPWPYPWGSGVPSQPQPALCPPGFFYPAAPMWNWSVPWFSSHTSAPNQMSPSSGSNSPTLGKHSRNDDDMVKEQDLQQQEEESSQRHRNGCVLVPKTLRIDDPDEAAKSSIWATLGIKNECVNVSGGGMFKAFQSKKKEEKNHVLETSSVLLANPAALSRSLNFHENT* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5531 549 Pfam Dof domain, zinc finger 199 255 IPR003851 GO:0003677|GO:0006355
Lja1g5531 549 MobiDBLite consensus disorder prediction 424 471 - -
Lja1g5531 549 MobiDBLite consensus disorder prediction 101 201 - -
Lja1g5531 549 MobiDBLite consensus disorder prediction 443 468 - -
Lja1g5531 549 PANTHER CYCLIC DOF FACTOR 2 62 548 IPR045174 GO:0003700|GO:0006355
Lja1g5531 549 MobiDBLite consensus disorder prediction 119 148 - -
Lja1g5531 549 MobiDBLite consensus disorder prediction 170 201 - -
Lja1g5531 549 ProSiteProfiles Zinc finger Dof-type profile. 201 255 IPR003851 GO:0003677|GO:0006355
Lja1g5531 549 ProSitePatterns Zinc finger Dof-type signature. 203 239 IPR003851 GO:0003677|GO:0006355
Lja1g5531 549 PANTHER CYCLIC DOF FACTOR 1 62 548 - -
Lja1g5531 549 MobiDBLite consensus disorder prediction 104 118 - -
Lja1g5531 549 MobiDBLite consensus disorder prediction 424 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5531 Lja-Chr1 95575368 95578386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5531 62 547 C2C2-Dof Transcription Factor Family AT3G47500 45.070 6.07e-119 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja1g5531 zf-Dof 3.6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5531 - - lja:Lj1g3v0513130.1 919.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5531 1 95575368 95578386 Lja4g2141 4 22968548 22971116 ECH
Lja1g2848 1 34280286 34284001 Lja1g5531 1 95575368 95578386 ECH
Lja2g1169 2 11093820 11097163 Lja1g5531 1 95575368 95578386 ECH
Lja1g5531 1 95575368 95578386 Lja1g5531 1 95575368 95578386 ECH