Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g5069 ATGAGAATGCAGCAGCAGCAGAGCACACTGTTGTTCCTGGTGGTGCTACTCTTCCACTCTCTAACAACCACAACCTGCAAATCCACCATCGAGCCATGCACAAACTCAGACTCATGCAACGCGCTTCTCGGCTACACTCTCTACACCGACCTCAAAGTCTCCGAAGTCGCTTCCCTCTTCGGAATCGACCCAATCTCTCTCCTCACCGCCAACGCCATTGACATCTCTTACCCCGACGCCGAACACCACATTCTCCCTCCCAAGCTCTTCCTCAAAATCCCCATTTCCTGTTCCTGCGTTGACGGGATTCGCAAATCGGTGTCCACCAGCTACAAGACGCGTCCTTCTGATACCCTTTCTTCGATTGCTGACTCTGTCTATGGTGGGTTGGTCTCTGCTGACCAGCTTAGAGAAGCGAACTCTATCACTGACCCTTCTGTGCTTGATGTGGGTCAGAGCCTTGTGGTGCCTCTTCCTTGTACTTGCTTCAATGGCTCTGATAACTCTCTGCCTGCTATTTACCTCTCATATGTGGTTCAGCCTGTTGATAGTTTGGCTGCAATTGCTGCAAGGTATTTGACTACTCTCACTGATTTGATGAATGTTAATGCAATGGGGAGCACAGCTATTTCTGATGGTGATATCCTTGCTGTTCCAATACCGGCTTGTGCTTCGAATTTTCCAAAATCTGCTTCTGATTTCGGCTTGCTTGTCCCTAATGGAAGTTATGCTATCACAGCAGGCCACTGTGTGCAATGTAGTTGTGGACCACGAAACCTCAATTTGTATTGTATGCCAACTTCTTTGTCTGCTTCTTGCTCTAGCATGCAATGTAAAAACAGCAATCTTATGCTCGGGAATGTGACAGCGCAACAGAGTAGTGCTGGTTGCAATGTTTCTTCTTGCAGTTATGACGGTCTTGTTAATGGCACCATAGCAACAACGTTGTCGGCATCTCTTCAGCCTCGATGTCCAGGGCTGCAGGAATTCCCTCCTCTAGTTGCTCCACCTACATCTGTTGAGAAGGACCCTACGTTTGCATCCGGACCAGCACCATCACCATCACCGCAGTCGCATGGATCTGGTCTACCGTCACCAAAATCCTCAGGCATGCCTGGGCTTCCAGGATTCTCTCCTGCAAACGGCCCCGTTAGTGGGATCTCTTCCGGTGCTTCTGCTGCATGCTCTTTGGTGAAGCCATCACCAACTTTGACGTCTGCTCTCGTGTTATTACTTGCCATGTTGGTGATCCCTGTGGCACTGTAA 1266 0.4953 MRMQQQQSTLLFLVVLLFHSLTTTTCKSTIEPCTNSDSCNALLGYTLYTDLKVSEVASLFGIDPISLLTANAIDISYPDAEHHILPPKLFLKIPISCSCVDGIRKSVSTSYKTRPSDTLSSIADSVYGGLVSADQLREANSITDPSVLDVGQSLVVPLPCTCFNGSDNSLPAIYLSYVVQPVDSLAAIAARYLTTLTDLMNVNAMGSTAISDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPRNLNLYCMPTSLSASCSSMQCKNSNLMLGNVTAQQSSAGCNVSSCSYDGLVNGTIATTLSASLQPRCPGLQEFPPLVAPPTSVEKDPTFASGPAPSPSPQSHGSGLPSPKSSGMPGLPGFSPANGPVSGISSGASAACSLVKPSPTLTSALVLLLAMLVIPVAL* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g5069 421 SUPERFAMILY LysM domain 110 158 IPR036779 -
Lja1g5069 421 SUPERFAMILY LysM domain 175 220 IPR036779 -
Lja1g5069 421 Pfam LysM domain 177 219 IPR018392 -
Lja1g5069 421 Pfam LysM domain 111 157 IPR018392 -
Lja1g5069 421 Gene3D LysM domain 103 163 IPR036779 -
Lja1g5069 421 CDD LysM 176 203 IPR018392 -
Lja1g5069 421 CDD LysM 109 156 IPR018392 -
Lja1g5069 421 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 7 365 - -
Lja1g5069 421 ProSiteProfiles LysM domain profile. 109 156 IPR018392 -
Lja1g5069 421 Gene3D LysM domain 164 230 IPR036779 -
Lja1g5069 421 ProSiteProfiles LysM domain profile. 175 218 IPR018392 -
Lja1g5069 421 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 7 365 - -
Lja1g5069 421 MobiDBLite consensus disorder prediction 331 381 - -
Lja1g5069 421 SMART LysM_2 176 219 IPR018392 -
Lja1g5069 421 SMART LysM_2 110 157 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g5069 Lja-Chr1 72426829 72430272 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g5069 1 396 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 68.000 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g5069 - - gmx:100808966 623.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g5069 1 72426829 72430272 Lja1g5069 1 72426829 72430272 ECH