Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4791 ATGGACACAGCTCAGTGGGCACAGGGGAATATTGGAGGAGTTGTTAAACCTATGGAAGGTTCAAACTCAAAGGCTAATATTAATAATAATCCTATGTTGGAGAGAAGGGCAAGGCCACAGAAAGATCAAGCTTTGAACTGTCCAAGGTGCAATTCAACCAACACAAAATTCTGTTACTACAACAACTACAGCCTCTCTCAGCCAAGGTACTTTTGCAAGACTTGTAGAAGGTATTGGACTGAAGGTGGTTCCTTGAGGAATGTTCCTGTGGGTGGTGGCTCTAGAAAGAACAAGAGATCCACACCATCATCTGCATCAACACCCGCATCATCATCAACACCTTTATCATCAACAATCAACAAAGCACCACTAAATTTCCCTCAATCTGCTTCTCAGAACCCAAAGATCCATCAAGGCCAAGATCTTAACCTAGCATACCCACCTCCACCTGAGGACTACAACACCATATCAAAATTCATGGAGGTTCCTTACAACAACAATGAAAACAACCAACACATTCAAAACACCACTCCCTCTTCAACAACACCTTCTCATCTAGAGCTTCTTAAAACTGGGATAACTTCCTCTTCAAGGGGTTTGAATAATTCTTTCATCCCTATGAATTTGTCTGATTCTAGCACAATGTATAATTCAAGTGGGTTCCCCTTGCAAGATTTTAAGCCAGGACTTAACTTTAGCCTTGAGGGTTTTGAGAATGGCTATGGGGGTCTCCAAGGGATTCAAGAGGGTGGTTCTGGTGGTGCAAGGATCTTGTTTCCTGTGGAGGAATTGAAGCAACAAGTTCCAAACAGTGGTGAGTTTGAGCAGAATAGGAGTCAAGGAGATTCAGCTGGGTATTGGAATGGCATGTTAGGTGGAGGATCATGGTAG 891 0.4299 MDTAQWAQGNIGGVVKPMEGSNSKANINNNPMLERRARPQKDQALNCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTPSSASTPASSSTPLSSTINKAPLNFPQSASQNPKIHQGQDLNLAYPPPPEDYNTISKFMEVPYNNNENNQHIQNTTPSSTTPSHLELLKTGITSSSRGLNNSFIPMNLSDSSTMYNSSGFPLQDFKPGLNFSLEGFENGYGGLQGIQEGGSGGARILFPVEELKQQVPNSGEFEQNRSQGDSAGYWNGMLGGGSW* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4791 296 ProSiteProfiles Zinc finger Dof-type profile. 45 99 IPR003851 GO:0003677|GO:0006355
Lja1g4791 296 MobiDBLite consensus disorder prediction 83 150 - -
Lja1g4791 296 Pfam Dof domain, zinc finger 42 99 IPR003851 GO:0003677|GO:0006355
Lja1g4791 296 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 293 IPR045174 GO:0003700|GO:0006355
Lja1g4791 296 ProSitePatterns Zinc finger Dof-type signature. 47 83 IPR003851 GO:0003677|GO:0006355
Lja1g4791 296 PANTHER DOF ZINC FINGER PROTEIN DOF4.6-LIKE 1 293 - -
Lja1g4791 296 MobiDBLite consensus disorder prediction 271 296 - -
Lja1g4791 296 MobiDBLite consensus disorder prediction 94 139 - -
Lja1g4791 296 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4791 Lja-Chr1 64879554 64881573 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4791 32 296 C2C2-Dof Transcription Factor Family AT3G61850 45.614 1.58e-55 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja1g4791 zf-Dof 1.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4791 - - qsu:112023740 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1739 3 19426001 19427854 Lja1g4791 1 64879554 64881573 ECH
Lja1g0068 1 595589 597666 Lja1g4791 1 64879554 64881573 ECH
Lja1g4791 1 64879554 64881573 Lja1g4791 1 64879554 64881573 ECH