Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4765 ATGGAAGCAGGGTTAGCTCCAAATTCATGCACAACAAGGGGAGTGTTAGAGAAGAAGACAAGCCCACAACCACAAGAGCAAGTGAATTGTCTAAGGTGCAATTCAACCAACACTAAGTTCTGCTATTACAACAACTACAGCCTCACACAACCCAGATACTTCTGCAAGACATGCAGAAGGTATTGGACAGAAGGAGGGTCTCTCAGAAATGTCCCAGTTGGAGGTGGTTCAAGGAAGAACAAGAGGATCATTACCTCAGCTTCACCAAAGGTTATTCCAGACTTAAATCCACCAATTCCAAATGCAAGCCTTAATAAAGTGCAACAAGTAGGCCATGATCTTAATTTGGCTTTTCCAGCTATGGGGAATTATCATCATGGTCATGGCATGTCATCTCCATATGTTGAAATGGGTCATGAGACCAGTAATTACCATATTTCTTCTTCTTGTTCTGCAGCTCCAATTGATTTATTAAGGTCTGGCTTGGTGGGTTCTAGGGGTTTGAATCCTTATGTTGTGATGCCAATGAGCTCAAATTCCCATTACCCTGCATCTGGGACTGGGTTCCCCATGCAGGAAATGAAACCAACCCTTGGGCTGGGCTTTTCACTTGATGGGCTTGAAAACAGATCATATAATGGGGTCCATGAGAATAATGGTGGAAGTGGGAGACATTTGTTCCCTTTCGGAGGAGACATCAAGCAACTTTCTGCTACAACTACTAGTGTTGAACTTGAAGTGGAACACAGTAATAAAGAAGAAGGAAATAACTCAACTGGATATTGGACTGGAATTAATGATTGGTGA 807 0.4263 MEAGLAPNSCTTRGVLEKKTSPQPQEQVNCLRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRIITSASPKVIPDLNPPIPNASLNKVQQVGHDLNLAFPAMGNYHHGHGMSSPYVEMGHETSNYHISSSCSAAPIDLLRSGLVGSRGLNPYVVMPMSSNSHYPASGTGFPMQEMKPTLGLGFSLDGLENRSYNGVHENNGGSGRHLFPFGGDIKQLSATTTSVELEVEHSNKEEGNNSTGYWTGINDW* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4765 268 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
Lja1g4765 268 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Lja1g4765 268 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 14 266 IPR045174 GO:0003700|GO:0006355
Lja1g4765 268 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 14 266 - -
Lja1g4765 268 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4765 Lja-Chr1 64311984 64313777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4765 23 265 C2C2-Dof Transcription Factor Family AT3G61850 47.015 1.34e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lja1g4765 zf-Dof 9.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4765 - - gmx:778110 283.108