Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4207 ATGTACACTACTACTCAGAACACAGTAATGCCATTAATCTTTTTGCCAGAGCCAGACCTCTCCTTGAACATTAGCCCTCCCTTCATTAATTCAGATTTTGAAGCCAAAGAAATGGGGGGCTACAATGGATTAACATTAAGTACCAGTAGTGGAAGTGATTTAAGCCAAGATAATGGCTTTTTCCACAGTGAGCCAAAATTGAGCTTAGGCATTGAAAATGTAGACTTGATGAATCCCCATCAAGTTGTACAAGGACTCTCAAGAAAGTTCAATCACTTCTACCAACCTCACATCCATGGCTGCAATTTCAAACGAAGCACTAGAAGTGGTGTGAAAAGAAGTGTGAGAGCTCCTAGAATGAGATGGACCACCACCCTTCATGCTCATTTTGTTCATACTGTTCAGCTCCTTGGTGGTCATGAAAGGGCTACTCCAAAGTCTGTGTTAGAGTTAATGAATGTTAAGGATCTCACCCTAGCTCATGTCAAGAGTCACCTGCAGATGTATAGAACCGTGAAGAGCACTGACAAAGGCACAGGTCATGGGCAGAAAGATATGGGGTTGAACCAAAAGACAGGGATGGCAATTTGTGAGAAAATCTCAGCTCGTGATAGGGCCTATAATTTGAACCAAAGGACATCATGGCAATCACCATCAATAGAGTCAAATACAAATAACTATAGACAGAAACCAGAAAATAGTTTGATGCATTCTCATCTCAAAGGAAACCAAACCACGGTGGGTGAACATAAATATGGAGTCCTATCAAATTGCATGAAGGAGGGGTTGGATGCTAGCTCTTTGTCACGTTCCGAGGTGAAGCTAATTGACCTTGAATTCACCCTTGGACTTAGGCCGCTTATCAAACAGAACACACGGAACCATCAAGAGAGTTCACTCTTCTCAAGTGTTAATTAA 918 0.4183 MYTTTQNTVMPLIFLPEPDLSLNISPPFINSDFEAKEMGGYNGLTLSTSSGSDLSQDNGFFHSEPKLSLGIENVDLMNPHQVVQGLSRKFNHFYQPHIHGCNFKRSTRSGVKRSVRAPRMRWTTTLHAHFVHTVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTDKGTGHGQKDMGLNQKTGMAICEKISARDRAYNLNQRTSWQSPSIESNTNNYRQKPENSLMHSHLKGNQTTVGEHKYGVLSNCMKEGLDASSLSRSEVKLIDLEFTLGLRPLIKQNTRNHQESSLFSSVN* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4207 305 SUPERFAMILY Homeodomain-like 115 172 IPR009057 -
Lja1g4207 305 Gene3D - 117 174 - -
Lja1g4207 305 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 118 171 IPR006447 GO:0003677
Lja1g4207 305 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 4 300 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lja1g4207 305 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 4 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4207 Lja-Chr1 53731805 53733803 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja1g4207 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4207 1 53731805 53733803 Lja1g4207 1 53731805 53733803 ECH
Lja5g3191 5 61925430 61929325 Lja1g4207 1 53731805 53733803 PCT