Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4179 ATGCAATCATCCAACGGTTCTGATTCCCAACAAACGGAGCAGCAGCGGCAACCGCCTCAGCCAGTGGCACTGGCGCCGCCACCGCAGCAGCAGCAGTGGGTGCCGATGCAATACCCTGCCGCCGCGATGGTAATGCCGCACCACATGTTGCCGCCACTGCATTACGCGCCGCCGCCGCAGGCCTACATGCCTTACCATCAATACCAGCAGCAGGTGCCGATGCACGTGCCGTCTCACTCGCACCAGGGATCCAGCGCCGCCGATAACAAGACGATCTGGGTCGGTGATTTGCATCACTGGATGGATGAGAATTATCTCCACCGCTGTTTTGCTTCCATCGGCGAGATTAACTCTATTAAGGTTATTCGCAATAAGTCTACTGGTCTGTCAGAGGGTTATGGATTTGTGGAATTCTATTCACATAGCACAGCTGAGAAAGTCTTACAAACTTATGCTGGGATGTTGATGCCTAACACGGAGCAACCTTTCCGCCTGAACTGGGCAACATTTAGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTCTCTATTTTTGTAGGAGATTTAGCTGGAGATGTTACAGATACCATGTTGCATGAAACTTTTGCTAATAAATACCCTTCTGTTAAGGCTGCAAAAGTTGTTTTTGATGCCAATACTGGACGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAGGCCATGAATGAAATGAATGGTGTTTACTGTTCGAGTAGGCCTATGCGAATTGGGGCTGCAACTCCTAGGAAATCATCTGGCTATCAACAAGGAGGCCAGTCAAATGGCACATCCAGCCAATCTGAAGCTGAATCTAATAACACAACTATATTTGTTGGTGGACTTGACCCTAATGTTAATGCTGAAGATCTTAGGCAGCCATTCTCACAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAGCTAAATGGCACAACGATTGGCAAGCAAACAGTTCGTCTTTCTTGGGGCCGCAATCCGGCAAATAAGCCGCAGTTTAGAGGGGATTTCGGCAGTCCTTGGAATGGGGCGTATTATGGGGGACCTGTTTATGATGGTTATGGATATGCTTTTCCGCCATCGCCTCATGATCCCAGCACATTTGCTGCTGCTTATGGGGCTTACCCTGTTTATGGAGGGCACCAACAGCAAGTAAGCTGA 1263 0.4806 MQSSNGSDSQQTEQQRQPPQPVALAPPPQQQQWVPMQYPAAAMVMPHHMLPPLHYAPPPQAYMPYHQYQQQVPMHVPSHSHQGSSAADNKTIWVGDLHHWMDENYLHRCFASIGEINSIKVIRNKSTGLSEGYGFVEFYSHSTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDKRSDNVPDLSIFVGDLAGDVTDTMLHETFANKYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMNEMNGVYCSSRPMRIGAATPRKSSGYQQGGQSNGTSSQSEAESNNTTIFVGGLDPNVNAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQTVRLSWGRNPANKPQFRGDFGSPWNGAYYGGPVYDGYGYAFPPSPHDPSTFAAAYGAYPVYGGHQQQVS* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4179 420 Gene3D - 89 169 IPR012677 -
Lja1g4179 420 SUPERFAMILY RNA-binding domain, RBD 182 361 IPR035979 GO:0003676
Lja1g4179 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 25 419 - -
Lja1g4179 420 MobiDBLite consensus disorder prediction 263 285 - -
Lja1g4179 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 262 IPR000504 GO:0003723
Lja1g4179 420 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 25 419 - -
Lja1g4179 420 SMART rrm1_1 91 166 IPR000504 GO:0003723
Lja1g4179 420 SMART rrm1_1 184 258 IPR000504 GO:0003723
Lja1g4179 420 SMART rrm1_1 289 356 IPR000504 GO:0003723
Lja1g4179 420 Gene3D - 276 391 IPR012677 -
Lja1g4179 420 SUPERFAMILY RNA-binding domain, RBD 61 157 IPR035979 GO:0003676
Lja1g4179 420 MobiDBLite consensus disorder prediction 1 19 - -
Lja1g4179 420 MobiDBLite consensus disorder prediction 259 285 - -
Lja1g4179 420 CDD RRM3_NGR1_NAM8_like 287 358 - -
Lja1g4179 420 Gene3D - 170 275 IPR012677 -
Lja1g4179 420 MobiDBLite consensus disorder prediction 1 31 - -
Lja1g4179 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 360 IPR000504 GO:0003723
Lja1g4179 420 CDD RRM2_SECp43_like 182 261 - -
Lja1g4179 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 159 IPR000504 GO:0003723
Lja1g4179 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 185 254 IPR000504 GO:0003723
Lja1g4179 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 353 IPR000504 GO:0003723
Lja1g4179 420 CDD RRM1_SECp43_like 91 171 - -
Lja1g4179 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 170 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4179 Lja-Chr1 53228156 53232429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4179 184 367 Eukaryotic Initiation Factors Gene Family AT4G34110 31.282 3.52e-20 91.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4179 1 53228156 53232429 Lja1g4179 1 53228156 53232429 ECH
Lja5g3170 5 61618504 61623255 Lja1g4179 1 53228156 53232429 PCT