Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4168 ATGTCTAGTCGGAGTGAACATCATCAATCGGTTCCCCTTTCGGTGCTGTTGAAGCGCGAATTGGTGAATGAGAAAATTGAGAAGCCGGAGATGGTCATTGTGCATGGCCAGGCTAGCGAGAATAAGAAAGGGGAGGATTTCACGCTGTTGAAGACGGAATGCCAGAGGGCGGTGGGGGATGGAGTCTCTACATATTCTGTTTTTGGGCTATTCGATGGCCACAACGGATCCGGTGCAGCTATATATACCAAGGAGAATCTTCTAAACAATGTTTTAGGTGCAATTCCTCCTGATCTTAATAGGGATGAATGGGTAGCAGCATTGCCTAGAGCCTTGGTTGCTGGTTTTGTAAAAACTGATAAAGATTTTCAGCAGAGAGCAAAAACATCGGGAACAACTGTAACCTTTGTAATTATAGAAGGATGGGTTATAACAGTTGCATCAGTTGGTGATTCCCGTTGCATACTTGAACCTTCTGAAGGTGGGATTTATTACTTGTCAGCAGATCATAGACTTGAAACCAATGAAGAGGAGAGGATACGTATCACTTCTAGTGGGGGTGAAGTTGGTCGGCTAAATACAGGTGGAGGTGCGGAGGTTGGTCCAATGAGATGTTGGCCTGGTGGCTTGTGTCTCTCACGATCGATTGGTGATATGGATGTTGGTGAATTTGTTGTCCCTGTACCATATGTAAAGCAAGTGAAGCTTTCCTCAGCTGGAGGTAGGCTTATTATATGCAGTGATGGAGTCTGGGATGCTCTAACTGCAGAAACGGTCCTTGATTGCTGTCGTGGCATGTCAGCAGAGTCTGCAGCACCACAAATTGTGAAAGAATCTTTGCAAGCAAAGGGACTTAGAGATGATACAACCTGCATCGTTGTTGATATATTACCCCAGGAGAAGCCACCTATTTCTGTGCCAATACAAAAGAAACCGGTAAAAGGAATGTTGAAGGCCATTTTTCGGAAAAAGTCCTCTGATTCATCTATGGACAAAGAATACATGGAGCCCGATGAGGTACGGGAACTATATGAGGAAGGATCTGCTATGCTTTCAGAAAGGTTAGAAACAAAATATCCCCTCTGCAACATGTTCAAGTTGTTTATATGCGCAGTGTGTCAAGTGGAGATTAAACCAGGAGAGGGTATTTCAATACATGAGGGCGCGCCTAACCCCTTAAAATTACGTCCCTGGGATGGACCTTTCCTTTGCTCGAGTTGCCAAGAGAAGAAAGAAGCCATGGAAGGGAAAGGAGCATCAGATAGACTTAGCAGCGGAAGTGACTAG 1287 0.4491 MSSRSEHHQSVPLSVLLKRELVNEKIEKPEMVIVHGQASENKKGEDFTLLKTECQRAVGDGVSTYSVFGLFDGHNGSGAAIYTKENLLNNVLGAIPPDLNRDEWVAALPRALVAGFVKTDKDFQQRAKTSGTTVTFVIIEGWVITVASVGDSRCILEPSEGGIYYLSADHRLETNEEERIRITSSGGEVGRLNTGGGAEVGPMRCWPGGLCLSRSIGDMDVGEFVVPVPYVKQVKLSSAGGRLIICSDGVWDALTAETVLDCCRGMSAESAAPQIVKESLQAKGLRDDTTCIVVDILPQEKPPISVPIQKKPVKGMLKAIFRKKSSDSSMDKEYMEPDEVRELYEEGSAMLSERLETKYPLCNMFKLFICAVCQVEIKPGEGISIHEGAPNPLKLRPWDGPFLCSSCQEKKEAMEGKGASDRLSSGSD* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4168 428 CDD PP2Cc 41 296 IPR001932 -
Lja1g4168 428 SMART PP2C_4 24 294 IPR001932 -
Lja1g4168 428 PANTHER ALPHABET, ISOFORM E-RELATED 3 424 - -
Lja1g4168 428 SUPERFAMILY PP2C-like 41 296 IPR036457 -
Lja1g4168 428 Gene3D - 28 302 IPR036457 -
Lja1g4168 428 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 3 424 - -
Lja1g4168 428 Pfam Protein phosphatase 2C 57 285 IPR001932 -
Lja1g4168 428 ProSiteProfiles PPM-type phosphatase domain profile. 25 296 IPR001932 -
Lja1g4168 428 SMART PP2C_SIG_2 50 296 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4168 Lja-Chr1 53084988 53089868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4168 1 428 PP2C-type Phosphatase Gene Family AT1G47380 77.958 0.0 700
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4168 1 53084988 53089868 Lja1g4168 1 53084988 53089868 ECH
Lja5g3153 5 61432172 61443008 Lja1g4168 1 53084988 53089868 PCT