Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4141 ATGAACAAGTCGATACTCATTCCGGTGGCGGCGGCGACCGCCGCCGGATTCGCCGCGACCCTTTTGGTGGTTCTCATCTGGCGGTGTTGTCTTCACAAGAAGCGTAGGAATTCTGTTGAGCCTGGAACGGAGAATCCGCCAATAGGGGTTTCTGTTTCACCTTTTCAATTGGATCAAGGGAGCAAGAAAAGTGGAAATTTCTATGCCTTTCGAAGTGGGGTTTCTGGGAAGAGGACAACTCTTTTCAGCTGGGCTGAGAATCCTTCCATGGCTGTTGATGCTGGTGAAAATGGATGGTCTCGATTTGCTTTCACGAACTATAAGAGTTACATGGCTTCTTCTTCGAAGAAGTCTGCACTGTTGGGAATGGGATCGTGTGTAGCACCACCAGCAGTGGGTGGTTCAGGAAGAGAATCAGAGGCTGAGATAACATGGGAAGTTTCAAGGGGTTCAGCTGAGTTTATGCAGAAGGTGAGACTCAACCCTGGGATGAGAAACTCTCATCAGAACAACAACAACAACAATAACAACAACAACCCTTCTATGGGTGTTGCTTCTGTGATTAGAACAGTTTTACCATTGCCTGGTCCTCCTTTGGGAAACTATGCTTTCCCACAAGAAGCCTATTTTGAAATCATCATCTTGTATTCTGGTGTTGGTGACAGTGAATCTGTTGGAAAAGGTGGTGAAGGTGAGAAGACCATGCTTCTGGTTCAGGGGAATTCAAATGCTAAAGGGAATTCGGAGGCTCTTGTTCATGTAACCAGCAGCAATGGTCATAAGATCAACAGTGTTGAGGAAATTAAGCTTGATAGCAGAGAGGGTGGGAAAAAGAGTGAATCTGTGAAATTCTCATTAGGATTAACGACTGGTGGTCCTGTTCTTTTGAATGTTCCAGGCAGCTACCCTGGGAGTATTGGGTTCAACTCCAATGGTTCTGTCTATCTTGATGGAATGAAACTTGTATTCGAGTCTGAGAAGGCAGAATGGATAGGAGCTGATAAGGTTATTGGCTGTGGGTTTGATCCAAGGCAGAAGAAAGTTTTCTTCACATTAGACTCAGAGTTGATGCATGTAATCCATTGCCAGTCAGAAGGATTTGGCACTCCACTCTATCCAACATTGGCTGCAAATATAGACATTCAGGTACTAGTTAATTTTGGACAAAGTGCATTTAAATATGCACCTGCAAATGCGCAGAGAACACCAAACCCATGTTTTATAGCACCACTTGTGAATTCGCCAACCCTGAGCTACGACGACAGCAAGGAACTATTCTCTATGGGAAGGATTGATTCTCAATGGCTTAATCGGTCTGCAACCAAAGGAAGCCACAACAGCAATGGGAATTATTTTCGAACTATGGATTTCGATGAGGAGTCTGAGGCTGATCTATTTGAAATTGTCTTAGATGGTCCTGGAAAATCTCCATACAGATCATCTACATAG 1449 0.4444 MNKSILIPVAAATAAGFAATLLVVLIWRCCLHKKRRNSVEPGTENPPIGVSVSPFQLDQGSKKSGNFYAFRSGVSGKRTTLFSWAENPSMAVDAGENGWSRFAFTNYKSYMASSSKKSALLGMGSCVAPPAVGGSGRESEAEITWEVSRGSAEFMQKVRLNPGMRNSHQNNNNNNNNNNPSMGVASVIRTVLPLPGPPLGNYAFPQEAYFEIIILYSGVGDSESVGKGGEGEKTMLLVQGNSNAKGNSEALVHVTSSNGHKINSVEEIKLDSREGGKKSESVKFSLGLTTGGPVLLNVPGSYPGSIGFNSNGSVYLDGMKLVFESEKAEWIGADKVIGCGFDPRQKKVFFTLDSELMHVIHCQSEGFGTPLYPTLAANIDIQVLVNFGQSAFKYAPANAQRTPNPCFIAPLVNSPTLSYDDSKELFSMGRIDSQWLNRSATKGSHNSNGNYFRTMDFDEESEADLFEIVLDGPGKSPYRSST* 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4141 482 PANTHER RAN BINDING PROTEIN 9-RELATED 8 479 - -
Lja1g4141 482 PANTHER SPLA/RYANODINE RECEPTOR (SPRY) DOMAIN PROTEIN 8 479 - -
Lja1g4141 482 Gene3D - 155 402 IPR043136 -
Lja1g4141 482 MobiDBLite consensus disorder prediction 37 56 - -
Lja1g4141 482 SUPERFAMILY Concanavalin A-like lectins/glucanases 285 394 IPR013320 -
Lja1g4141 482 CDD SPRY_RanBP_like 267 388 IPR044736 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4141 Lja-Chr1 52630085 52632935 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4141 1 52630085 52632935 Lja1g4141 1 52630085 52632935 ECH
Lja5g3131 5 61095507 61097881 Lja1g4141 1 52630085 52632935 PCT