Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4140 ATGGAAGCAGGGGAAAATTGCTGCGTCAAGGTTGCGGTTCATGTGCGACCACTCATCGCCGACGAGAAGCTTCAAGGCTGCAAAGATTGCGTAACCGTCGTCGCCGGGAAGCCTCAGGTACAAATTGGCGCACACTCGTTTACATTTGATCATGTTTATGGAAGCACTGGTTCGCCGTCATGTTCCATGTTTGAAGAATGTGTTGCTCCTCTTGTTGATGGTTTGTTTCAAGGATATAATGCTACTGTTCTCGCATACGGTCAGACAGGTTCTGGGAAAACATACACTATGGGGACAGGCTTCAGAGAAGGTTTCCAAACAGGAATAATACCCCAAGTTATGAATGTTTTGTTTAACAAAATTGAGACCTTAAAGCACCAGACTGAATTTCAGTTGCATGTCTCCTTTATCGAGATTCTTAAAGAAGAAGTAAGAGACTTGATGGATCTCTCCTCCATGAGCAAACCAGAAACTGCAAATGGACATGCAGGAAAAATTACCTCACACGGGAAGCCACCGATACAAATTCGTGAGACATCAAATGGTGTCATAACTCTTGCAGGATCAACTGAAGTCAGTGTAACAACATTGAAAGAAATGGCTGCTTGCCTGGAACAGGGATCCTTGAGCAGAGCAACTGGGAGCACAAATATGAACAACCAATCCAGTCGATCTCATGCCATCTTCACCATCACATTAGAGCAAATGAAGAAACTCAATGTTCCTAATGGCGGCTGTTTAAATGAAACCACGAATGAAGAGTATCTTTGTGCCAAGTTGCACTTAGTAGATCTTGCTGGATCAGAACGAGCTAAAAGAACAGGGTCTGATGGTCTGCGCTTTAAGGAAGGAGTTCACATTAACAAAGGCCTTCTTGCACTTGGTAATGTTATAAGTGCACTTGGTGATGAAAAGAAGCGAAAGGAAGGAGTTCATGTTCCATATAGGGATAGTAAACTTACCAGGCTTTTGCAGGATTCACTTGGAGGTAACAGCAGAACTGTCATGATAGCCTGCATAAGTCCTGCTGATATTAATGCTGAGGAAACCCTGAATACTTTGAAGTATGCAAATCGTGCACGCAATATCCAAAATAAGCCTGTAATCAATAGAGACCCCATGTCCAGTGAGATGCTAAAAATGCGACATCAACTGGAGTGTTTGCAGGCAGAACTTTGTGCACGTGCTGGTGGCTCTACTGAGGAAGTTCAGGTCCTTAAGGAAAGGATTGCTTGGCTTGAAGCTGCTAATGAAGATCTATGTCGTGAACTTCATGATCACCGGAGTAGATGCTCTGTTGTAGAACAAAGTGAAAAGGATGCTTATGGTGCCAGCCCATGCATTATGAAGGTAGATGGGCTGAAGAGGAGCTTACCTATGACAGCGGCTGATTATCCAATGAGTGAAACAGCAGGTGATTCACGGGAAATTGAAGAAGTAGAAAAAGAGTGGGAGCACACACTTCTGCAAAATAGTATGGATAGGGAGTTAAATGAATTGAATAAACGCTTGGAGCAGAAAGAGTCTGAGATGAAGCTTTTTGGAGTATCTGATGCTGAAGTACTCAAGCATCACTTTGGAAGGAAGATAATGGAACTGGAGGATGAGAAGAAAACAGTGCAGCGAGAGAGAGATTGTCTATTGGCTGAAGTTGAAAATCTTGCTGCCAATTCTGATGGACAAACACAGAAATTAGAGGATATCCATGCCCAAAAACTGAAAGAACTTGAAGTACAGATTCTGGATCTAAAGAGGAAGCAAGAGAGCCAGGTTCAGCTTCTGAAGCAAAAGCAAAAAAGTGATGAAGCAGCAAAGAGACTGCAAGATGAAATACAGTCTATGAAGGCGCAAAAGGTTCAATTGCAGCAAAGAATGAAACAAGAAGCAGAACAGTTTCGGCAATGGAAGGCTTCTAGAGAGAAAGAGCTGTTGCAATTAAAGAAGGAGGGAAGAAGAAATGAGTATGAGAAGCACAAGCTTCAGGCTTTAAATCAGCGCCAGAAAATGGTCCTTCAGAGAAAAACTGAAGAAGCTGCAATGGCAACCAAGAGGTTAAAAGAGTTGTTGGAAGCTCGTAAAAATTCCAGCCGAGACGCTTCAGTTATAATTAATGGAAGTGGAACAAATGGGCAGGGCAACGAGAAATCCTTACAAAGGTGGCTAGATCATGAACTGGAAGTCATGGTAAAAGAGCATGAAGTTCGTTTTGAGTATGAGAAACAAAGCGAAGTGCGAGCTGCCCTTGCAGAGGAATTGGCCCTGCTAAAGCAAGTAAATGAGTTTGCTGCTAAGGGTCTTAGTCCTCCAAAGGGAAAGAATGGTTTTGCCAGGTTTTTTCCCCATATCAATCTAATTTTATTTGCTAATGCCTACTTCACTTTTCAAAAATATTGGATCTTTAAAACAACAATGCTTGGAATATATCGGTCTTCCTGGTTTATTTTAAACCTTGTCTTTCTTAGGGCATCCTCCATGTCACTAAATGCAAGAATGGCCAGAATAGCTTCACTCGAGAACATGTTGAGCATATCATCTAATTCCCTTGTGGCAATGGCTTCTCAACTTTCCGAGGCAGAAGAACGAGAACGGGCATTCACTAATCGTGGACGCTGGAATCAGTTGCGCTCTATGGGAGAAGCCAAGAGTTTACTTCAGTATATGTTTAATTCTGTTGCAGACTCTAGGTGCCAACTCTGGGAGAAGGACATGGAGATCAGAGAAATGAAAGATCAAATCAAAGAACTTGTCGGACTATTAAGGCAGAGTGAGATGAAGAGAAAGGAAGCTGAGAAGGAGATGAAAGTGAGAGAGCAAGCAGTTACAACCACATTGTCTACACCAGCTTCTGTAAACACTCCAAATTCATTGAAAGAATATGCTGAAATGCCCTTATCTCCCGTGTCTCTACCTGTACCAAAACAGCTAAAATATACTCCAGGCGTTGCTAATGGCTTAACGAGGGAATCGGCAGCATTTGTAGATCAGGGTAGAAAGATGATACCCATGGGGCAGCTGTCAATGAAAAAACTAGCAATGGTAGGACAAGCTTCTGGCAAGTTATGGAGATGGAAAAGAAGTCATCATCAGTGGCTACTACAATTCAAGTGGAAGTGGCAGAAACCATGGAAACTTTCAGAATTGATCCGACACAGTGATGAGACAATCATGAGAGCAAAGCCACGCTCACAGGCTTTGCGACACATCATGTGA 3210 0.4271 MEAGENCCVKVAVHVRPLIADEKLQGCKDCVTVVAGKPQVQIGAHSFTFDHVYGSTGSPSCSMFEECVAPLVDGLFQGYNATVLAYGQTGSGKTYTMGTGFREGFQTGIIPQVMNVLFNKIETLKHQTEFQLHVSFIEILKEEVRDLMDLSSMSKPETANGHAGKITSHGKPPIQIRETSNGVITLAGSTEVSVTTLKEMAACLEQGSLSRATGSTNMNNQSSRSHAIFTITLEQMKKLNVPNGGCLNETTNEEYLCAKLHLVDLAGSERAKRTGSDGLRFKEGVHINKGLLALGNVISALGDEKKRKEGVHVPYRDSKLTRLLQDSLGGNSRTVMIACISPADINAEETLNTLKYANRARNIQNKPVINRDPMSSEMLKMRHQLECLQAELCARAGGSTEEVQVLKERIAWLEAANEDLCRELHDHRSRCSVVEQSEKDAYGASPCIMKVDGLKRSLPMTAADYPMSETAGDSREIEEVEKEWEHTLLQNSMDRELNELNKRLEQKESEMKLFGVSDAEVLKHHFGRKIMELEDEKKTVQRERDCLLAEVENLAANSDGQTQKLEDIHAQKLKELEVQILDLKRKQESQVQLLKQKQKSDEAAKRLQDEIQSMKAQKVQLQQRMKQEAEQFRQWKASREKELLQLKKEGRRNEYEKHKLQALNQRQKMVLQRKTEEAAMATKRLKELLEARKNSSRDASVIINGSGTNGQGNEKSLQRWLDHELEVMVKEHEVRFEYEKQSEVRAALAEELALLKQVNEFAAKGLSPPKGKNGFARFFPHINLILFANAYFTFQKYWIFKTTMLGIYRSSWFILNLVFLRASSMSLNARMARIASLENMLSISSNSLVAMASQLSEAEERERAFTNRGRWNQLRSMGEAKSLLQYMFNSVADSRCQLWEKDMEIREMKDQIKELVGLLRQSEMKRKEAEKEMKVREQAVTTTLSTPASVNTPNSLKEYAEMPLSPVSLPVPKQLKYTPGVANGLTRESAAFVDQGRKMIPMGQLSMKKLAMVGQASGKLWRWKRSHHQWLLQFKWKWQKPWKLSELIRHSDETIMRAKPRSQALRHIM* 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4140 1069 ProSitePatterns Kinesin motor domain signature. 258 269 IPR019821 GO:0003777|GO:0005524|GO:0007018
Lja1g4140 1069 Coils Coil 403 423 - -
Lja1g4140 1069 PRINTS Kinesin heavy chain signature 259 277 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g4140 1069 PRINTS Kinesin heavy chain signature 313 334 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g4140 1069 PRINTS Kinesin heavy chain signature 78 99 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g4140 1069 PRINTS Kinesin heavy chain signature 216 233 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g4140 1069 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-LIKE PROTEIN 819 1068 - -
Lja1g4140 1069 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-LIKE PROTEIN 2 779 - -
Lja1g4140 1069 SMART kinesin_4 6 371 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g4140 1069 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 2 779 - -
Lja1g4140 1069 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 819 1068 - -
Lja1g4140 1069 Coils Coil 523 557 - -
Lja1g4140 1069 Coils Coil 905 939 - -
Lja1g4140 1069 Gene3D Kinesin motor domain 2 391 IPR036961 -
Lja1g4140 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 393 IPR027417 -
Lja1g4140 1069 CDD KISc_KIF4 7 364 - -
Lja1g4140 1069 MobiDBLite consensus disorder prediction 155 174 - -
Lja1g4140 1069 Pfam Kinesin motor domain 16 363 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g4140 1069 ProSiteProfiles Kinesin motor domain profile. 8 363 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Lja1g4140 1069 Coils Coil 566 638 - -
Lja1g4140 1069 Coils Coil 490 510 - -
Lja1g4140 1069 Coils Coil 671 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4140 Lja-Chr1 52591374 52600834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4140 1 389 Miscellaneous Gene Families AT5G06670 36.041 4.25e-52 194
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4140 1 52591374 52600834 Lja1g4140 1 52591374 52600834 ECH
Lja5g3126 5 61000261 61011762 Lja1g4140 1 52591374 52600834 PCT