Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4138 ATGGCTCCGAATAGATTGGCGGTGGCCACGATCACCACCGTCTTGGTGGTAGTCATCACGGTGTCATCGGCGATGGACATGTCGATCATTTCGTACAGCAGAGACAAGTCTGCACCGCCTCTGAGGAGTGACGAGGAGGTAATGAGGATGTACGAGGAGTGGGCTATGAAGCAAGGGAAAGTGTACAACGCTCTCGGCGAGAAGGAGAAGAGGTTCGAAATCTTCAAAGACAACCTCAAATTCATCGACGAGCACAATGCAGAGAACCGGACTTACAAGGTGGGGTTGAACCGGTTCGCTGATCTTAGCAACGAGGAGTACAGGGCCAAGTTCCTGGGAATCAGAGTTGATTCCAACAGGAGGAGGAGGAGGATGGCGAAGTCCACCACCAGCAACCACCGTTATGCTCCGCGTGTCGGTGACGGTGAGAAATTGCCTGAATCTGTTGATTGGAGGAAGGAAGGTGCTGTGGTAGGAGTCAAAGATCAAGGAGAATGCGGGAGCGCCTGGGCATTTTCAGCGGTAGCTGCTGTTGAAGGAATCAACAAGATAGTAACAGGTGATCTGGTTTCACTATCAGAGCAAGAACTCATAGACTGTGACAGATCATATAATGCAGGATGCGATGGGGGACTCATTTTTTTCGCCTATGAGTTCATCATTAGAAATCGTGGTATTCACACGGAACAGGAATACCCCTATCTTGGTGTTGACGGTATATGTGATAGATACAGGAAATATGATGGAGTTGTTACAATTGATGACTACGTAGATGTTCCTGAAAATGATGAGTTAGCCTTGAAAAAGGCTCTAGCAAATCAGCCAGTGAGCGTCGCCATTGAAGCATCTGGCAGAGAATTCCAGTTATATGTATCAGGTATATTCACAGGAAGATGTGGGATAGATTTAGACCATGCTACTACGGTGGTTGGATACGGAACAGAACGCGGTGTTGATTATTGGATTGTGAAGGAGTCATACGGTAAGAGGTGGGGAGAATCAGGGTATATCAGAATGGAACGTAATCTGAAGACAAGCAATACAGGCAAGTGTGGAATTGCAATGCTGGCCTCCTACCCCATAAAGAAAGCCCAAAATCCCCAAACCTTGAATCATCTCCTCCTCCACCCATGA 1134 0.4762 MAPNRLAVATITTVLVVVITVSSAMDMSIISYSRDKSAPPLRSDEEVMRMYEEWAMKQGKVYNALGEKEKRFEIFKDNLKFIDEHNAENRTYKVGLNRFADLSNEEYRAKFLGIRVDSNRRRRRMAKSTTSNHRYAPRVGDGEKLPESVDWRKEGAVVGVKDQGECGSAWAFSAVAAVEGINKIVTGDLVSLSEQELIDCDRSYNAGCDGGLIFFAYEFIIRNRGIHTEQEYPYLGVDGICDRYRKYDGVVTIDDYVDVPENDELALKKALANQPVSVAIEASGREFQLYVSGIFTGRCGIDLDHATTVVGYGTERGVDYWIVKESYGKRWGESGYIRMERNLKTSNTGKCGIAMLASYPIKKAQNPQTLNHLLLHP* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4138 377 Pfam Cathepsin propeptide inhibitor domain (I29) 51 107 IPR013201 -
Lja1g4138 377 Pfam Papain family cysteine protease 145 361 IPR000668 GO:0006508|GO:0008234
Lja1g4138 377 PANTHER CYSTEINE PROTEASE 35 367 - -
Lja1g4138 377 SMART Inhibitor_I29_2 51 107 IPR013201 -
Lja1g4138 377 SUPERFAMILY Cysteine proteinases 42 361 IPR038765 -
Lja1g4138 377 CDD Peptidase_C1A 146 360 IPR039417 -
Lja1g4138 377 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 35 367 - -
Lja1g4138 377 Gene3D Cysteine proteinases 22 363 - -
Lja1g4138 377 SMART pept_c1 145 361 IPR000668 GO:0006508|GO:0008234
Lja1g4138 377 PRINTS Papain cysteine protease (C1) family signature 320 326 IPR000668 GO:0006508|GO:0008234
Lja1g4138 377 PRINTS Papain cysteine protease (C1) family signature 163 178 IPR000668 GO:0006508|GO:0008234
Lja1g4138 377 PRINTS Papain cysteine protease (C1) family signature 305 315 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4138 Lja-Chr1 52566953 52569290 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4138 1 52566953 52569290 Lja4g3378 4 63871723 63874864 ECH
Lja1g4138 1 52566953 52569290 Lja5g0380 5 3366377 3368889 ECH
Lja1g4138 1 52566953 52569290 Lja1g4138 1 52566953 52569290 ECH
Lja5g3121 5 60948765 60953130 Lja1g4138 1 52566953 52569290 PCT