Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4130 ATGGATAGAGTAAGAGGTCCATGGAATCCTGAAGAGGATGAAACGTTGAAGAGGTTGATTCAGACCCACGGCGCCAGAGACTGGTCCATTATCAGCAAATCGATTCCGGGTCGATCTGGAAAGTCTTGCCGGCTGCGGTGGTGCAACCAGCTGTCACCGGAGGTGGAGCGGAGGCCTTTCACGCCGGAGGAGGATGAAGCGATTATTAAAGCTCATGCGGAATTCGGGAATAAGTGGGCAGCCATCTCGCGGCTACTAAACGGCCGCACCGACAACGCTATCAAGAATCACTGGAATTCCCCTCTTAAGAGGAAATGTTCCACCACCGAGCACTATCACTACCCGCCTCTCAAGCGATCCACCAGCGACACCCTTTCCTGGAATAAGGGGATGCCCATGCCCATTTTGGCTCCGCCTCCGACTCGAGCACCTACAACTGATCCGATAACATCACTCAGTTTATCCCTGCCTGGATACGACTTATGCAACGGATCCGGTCCAAATCATGGGTTCAATTGCGGCCCAACCCGGGATATTCAACCTTCCCTAGGCAACTGTAAAGGTTGTGAGCGGCTCAGTGCGGAGTTATTGGTCTTTATGCAAGAGATGATTCGAATAGAAGTGAAGAATTATATGCGTGAGGTAGAGCAAAATGGTTTACTATATTGA 669 0.5097 MDRVRGPWNPEEDETLKRLIQTHGARDWSIISKSIPGRSGKSCRLRWCNQLSPEVERRPFTPEEDEAIIKAHAEFGNKWAAISRLLNGRTDNAIKNHWNSPLKRKCSTTEHYHYPPLKRSTSDTLSWNKGMPMPILAPPPTRAPTTDPITSLSLSLPGYDLCNGSGPNHGFNCGPTRDIQPSLGNCKGCERLSAELLVFMQEMIRIEVKNYMREVEQNGLLY* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4130 222 ProSiteProfiles Myb-like domain profile. 1 51 IPR001005 -
Lja1g4130 222 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Lja1g4130 222 CDD SANT 7 49 IPR001005 -
Lja1g4130 222 CDD SANT 59 99 IPR001005 -
Lja1g4130 222 Gene3D - 4 56 - -
Lja1g4130 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 106 IPR017930 -
Lja1g4130 222 SUPERFAMILY Homeodomain-like 2 98 IPR009057 -
Lja1g4130 222 Gene3D - 58 125 - -
Lja1g4130 222 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 55 IPR017930 -
Lja1g4130 222 SMART sant 56 104 IPR001005 -
Lja1g4130 222 SMART sant 4 53 IPR001005 -
Lja1g4130 222 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 1 122 - -
Lja1g4130 222 PANTHER MYB PROTEIN-RELATED 1 122 - -
Lja1g4130 222 Pfam Myb-like DNA-binding domain 8 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4130 Lja-Chr1 52410876 52411578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4130 2 217 MYB Transcription Factor Family AT5G67300 44.928 1.65e-66 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lja1g4130 Myb_DNA-bind_6 2.4e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4130 1 52410876 52411578 Lja2g0300 2 2758008 2759889 ECH
Lja1g4130 1 52410876 52411578 Lja4g3387 4 64101993 64103624 ECH
Lja1g4130 1 52410876 52411578 Lja1g4130 1 52410876 52411578 ECH
Lja5g3113 5 60836478 60837663 Lja1g4130 1 52410876 52411578 PCT